Callorhinchus milii (elephant shark): 103186445
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Entry
103186445 CDS
T03088
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
cmk
Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmk03021
]
103186445 (scaf8)
03041 Spliceosome [BR:
cmk03041
]
103186445 (scaf8)
Transcription machinery [BR:
cmk03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103186445 (scaf8)
Spliceosome [BR:
cmk03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
103186445 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RNA_bind
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
103186445
NCBI-ProteinID:
XP_007903677
LinkDB
All DBs
Position
Unknown
AA seq
1135 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISRAKMNQVTKAAIKAIKFYKHVVQSVEKFVQKCKPEYKV
PGLYVIDSIVRQSRHQFGPEKDVFAPRFCKNINSTFQNLYKCPADDKSKVVRVLNLWQKN
SVFKSEVIQPLLDMAAGIPPPSVTPAIASTAATVSSNTPGTPATPATPANVVQNLPDSWA
SISQMSNTDTIAAVAQLLQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALT
AQLTAAATAANTLNPLEQRLNFNKKLLDRFEYDEEHDRSEEVKKETPPSQLPLVTETMNT
SLFQQLAEQFQQQNFEQFRQQLMEQQQQTQQNTTLDNQEVTFGSEKSVTPSQGSTQLLLE
QEIKMEDSLEQQQQDMDIDAPDGQETIEEEIFEQEEKKPIVRSRSRTRSQSRSRSPRKKR
SRSRSGSRKRKHRKRSRSRSKERKRKSSRSYSSERRAKERQRKGLPPVRSKTLSVCSTTL
WVGQVDKKATQQDITNLFEEFGQIESINMIPPRGCAYVSMVHRQDAHNTLQELSTGSFKM
GSKIIKIAWALNKGVKPEYKQFWDVDLGVTYIPWEKVKLDDLVGFSEGGMIDQETVNSEW
KSRKSTSANENVPQTSATDGNTQPTSQAEAFTQPVTMLPVQIPVVPTVSGVGIVQPPTFP
LSMSIPPPGFNPAIPPPPFLRPGFNPSQPPPGYLPPPVVPLPAVVPSIPAVQSSLGHPSL
STTQDGAKDSPFGNLLSHIGSGPSSLTSPVIQPGSMFNQVGSQAPPAGLVGSNDLGASRT
VNQTSSSETVSTTGPGNQSAASSGPALGMQPSTPGQGPQSLPPPNMPGPRMPGGLPLDMR
SGMMPPSPGQRFPLLMPPQPNMPPSLAIDGALQSGPRGSFLPGSPFSRPEGAFVRSGVPS
VDSGTNTNQAPGDERRSAGNESSNFQRDSMQQEGDRDYRFPPVEGRDGVGRRDQFGYGHD
HRWGSRDFDERERRGMPFGGPKVFHDDHDRYGGRNFRFDGRSGPMWNRGFDQEAHRDFDD
RSRPWERQRDRDDRDFAFRRDVNGSRFGRDREQDHWVPPRQRFDYFQGTTEHQKPDDRPR
VNGDFSETDSQPPNEEIENNVPELPAKLDSPTDESQEKNDLENPPVTENKDNEET
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagccttcaacaacgagctttactcattaaatgagtacaaaccacct
atctccagagctaaaatgaaccaggtgaccaaggcggctatcaaggctattaagttctac
aaacatgtggtacagagcgtggaaaagtttgtgcaaaagtgtaaacctgaatacaaagtc
ccaggactgtatgttatcgactcaattgtgcgtcagtctcgtcatcagtttggtccagaa
aaggatgtctttgctcccagattttgcaagaacatcaattcaactttccagaacttatac
aaatgccctgctgatgacaagagtaaggtggtgcgagttttgaacctgtggcagaagaac
agtgtgttcaaaagtgaggtgattcaaccactgctggatatggcagcagggattccacca
ccctcagtcacgcctgctattgccagtactgcagccactgtgagcagcaacaccccagga
acgccagccactcctgctacccctgctaacgtagtacagaatttgcctgactcctgggcc
tcaatctcgcagatgtctaacacagataccattgctgctgtagcacagcttctgcagagc
ccccaggggcaacagctccagcagttggttcaaagtcttcagatgcagcaacagaaacct
cagccgtctctgcttcaggctctggatgcgggtctggtggttcagctgcaggctctgaca
gctcagctcacagcagctgcaacagcagcaaatacactcaatcctttggaacagagactt
aattttaataagaaactcctggataggtttgaatatgatgaagagcatgatcgctcagaa
gaagttaagaaggaaacacctccatcgcagctacctctcgtaactgagaccatgaacaca
tcactttttcaacagttggctgaacagttccagcagcaaaactttgagcagtttcgtcag
cagctgatggagcaacagcaacagacacaacagaatacaactctggacaatcaggaagtc
acatttggctctgaaaagtcagtgactccatcacagggcagcactcaactactgctggag
caggagatcaaaatggaggattcacttgagcaacaacagcaggatatggatattgatgca
cctgatggtcaggaaactattgaagaggaaatctttgaacaagaagaaaagaaaccgatt
gtgcgctccaggtctagaacacgttcacagtctcgttcaagatcaccaaggaagaaaagg
tctcgatctaggtcaggttctcgcaaacgaaagcatcgaaaacgctcccgctccaggtca
aaagagagaaaaagaaagtcatctcgttcgtactcgagtgaaagaagagcaaaggagcgt
cagagaaagggtctgcctccggtccggtctaaaacacttagcgtatgtagtactacactg
tgggttggccaggtagacaaaaaggctacgcaacaagacataacaaatctctttgaggaa
ttcggccagattgaatcaattaatatgatacctcctcgtggatgtgcatatgtttccatg
gttcatcgacaagatgctcataatactcttcaggaattaagcactggatcatttaaaatg
gggtccaaaattattaagattgcttgggctttgaacaaaggtgtgaaacctgagtataag
cagttctgggatgtcgaccttggtgtcacatatattccatgggaaaaagtaaaattagat
gatttggtaggattctcagaaggaggaatgatcgaccaagaaactgtgaatagtgagtgg
aaatctaggaaatccacgtctgcaaatgaaaatgtgccccaaacttcagctactgatggt
aatactcagccaacatcccaagctgaggcattcactcagcctgttactatgctgcctgtc
cagattccagtggttccaacggtttcaggtgttggtatagtccagccaccaacctttcct
ctgtcgatgtctatacctccaccaggcttcaaccccgctattccaccacctccattctta
cggcctggttttaacccttcacaacctcctccaggatatctgccaccaccagttgttcca
cttccagctgttgttccttctataccagcagtacagagttctctaggtcacccgtccctc
tccaccacccaagatggtgcaaaggattctcctttcgggaacctgctttctcacataggc
tctggacccagtagccttacgagtcccgttattcaaccagggagcatgtttaatcaagtt
ggctcccaggctcccccagctggtcttgtcggatcaaatgatctgggagcttcacgtaca
gtcaaccagacttcttcatctgaaactgtgtctacaactggaccaggaaatcaaagtgca
gcatcaagtggacctgccctggggatgcagccatcaacacctggacaaggacctcagagt
ttgcctccaccaaatatgcctggaccgaggatgcctggtgggcttccactggatatgcgc
tcaggaatgatgccaccctcacctgggcagcggttcccattgttgatgcctcctcagcca
aacatgcctccatcattagcaattgatggagctcttcagtcagggcccagaggttccttt
ctcccaggaagccctttcagtcggcctgaaggagcctttgtgagatctggagtacccagt
gttgacagcggtacaaacacaaaccaagctccaggggacgaaaggcgatctgctggaaac
gagagcagtaactttcagagagacagtatgcaacaagaaggtgaccgggattatcgcttt
ccgcctgttgaaggtagggatggtgttggaagacgggatcaatttggctacggtcacgac
catcgatggggctcaagagattttgatgagcgagagcgccggggcatgccatttgggggc
cccaaagtttttcatgacgatcatgatcggtacggtggaagaaatttccgatttgacgga
agaagtggtcctatgtggaaccgaggctttgaccaggaggcacatagagattttgatgac
cggagccggccttgggaacggcagagggatcgcgacgaccgggacttcgccttccgccga
gacgtgaacggcagccgctttgggagagacagagagcaagaccattgggttcctcctcgc
caaaggtttgactattttcaggggaccactgaacaccaaaagcctgacgataggcctcgg
gtaaacggtgatttctcagaaacagacagccagccaccaaacgaggagattgaaaataat
gtcccagaactgcccgcgaagctggactctcccacagatgaaagccaggagaagaacgat
ttggagaatccacctgtgacagaaaacaaagataacgaggagacataa
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