Callorhinchus milii (elephant shark): 103186452
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Entry
103186452 CDS
T03088
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103186452 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cmk03000
]
103186452 (arid1b)
03021 Transcription machinery [BR:
cmk03021
]
103186452 (arid1b)
03036 Chromosome and associated proteins [BR:
cmk03036
]
103186452 (arid1b)
Transcription factors [BR:
cmk03000
]
Eukaryotic type
Helix-turn-helix
ARID
103186452 (arid1b)
Transcription machinery [BR:
cmk03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103186452 (arid1b)
Chromosome and associated proteins [BR:
cmk03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103186452 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
103186452
NCBI-ProteinID:
XP_007903689
LinkDB
All DBs
Position
Unknown
AA seq
2276 aa
AA seq
DB search
MIMAAQVAAAPANSNNNNGSSGGGGSPGGSSSGSLSGRESDINNGSKSVAMAAASSSPPS
SAAAAGLGLALSGGEGLTLNSVDHPRLPLRHHHHHHHQPPPPGQGEPGMMGHSAVPGDNN
NNNNGGGGGGGGGGSSSSASSNNSDPDPELPPHKDTASASPSAGSNSSPSSSSSSSCSGA
VMAAPEPGLMIPNHHKLKPAAGDLQLLPPPPHHQGEGEGGGGADSQHGGGGGKDSGGGLL
AADGQGNNNSGGGGGGKTDEELLKMGDQRYEHPAAATPGQGQGQSLGLAPGLADYNYYRA
GSAGAGGPGPGPYFDQHGGQQSPGLGLHPSPGPAQAQASGQELQAGGVSVSPSPLHNSHD
GYSSNNSYNHHYSAYRPTYSSGPAAYSMLSSPRANSSPGLHHHPHHHHPHLGNKQQPLQP
AAAFQRFSLQNQHSGGATPTLNQLLTSPSPAMRGYGFPDYGSAAAAAAGASQASLKVSSG
GGSSDIMASQYGVASSQGWGSAAGGQPGRSPHPAMSPGSTAQPLGRAQANPMEQMGMKRY
GMSNNPYSQQQQSGPYPGQPYGPSTAQRYPMGMQARTQSSMAAMQYPQQQQMPPQYTQQG
MSGYCQQGQQPYYNQQQQQQPPPYIQQRYQSQQDMSQEGYGARTAPPLTPSKPNHEDMSL
LQQERPSSLPDLSGSIDDLPTGTEGTLSSGVSASGSSSGQGEQSNPAQSPFSPHASPHLS
GIRGPSPSPVGSPVGSNQSRSGPLSPAGVPGNQMAPQPPSNQLDVGSHPAMSQSPMSQER
GFMSNMQRNTQMTQYASQQTVPSMSPHPSPGGQIHPGMGPYQQSNSSSTYGSQSGQYGPQ
GNYPRPPNYGAVPNTNYSGPGPGMGNSMSMTVNNQMHGQGPAQPCSNMTVGRMPPSGMSN
WPYTGNMTSNSPNMSQQQQMVVGAGMGPPMGTVNRKAQEAAAAVMQAAANSAQNRQAGYT
GMNQSGIMGSSSPYSQSMNNSSVLMNPQAAPYNMVNSSSASMSLGTDMMTQGESKLPVAQ
KLDSKEDGPPSSETKSKKSNSSTTGEKIARLYDLGVEQDRKIWIDRYLSFMEERGTPVAS
LPAVGKKPLDLYRLYACVKEIGGLAQVNKNKKWRELATTLCVGTSSSAASSLKKQYIQYL
FAFECKIERGEEPPPEMFTPAESKKQPKIQPPSPAGSGSLQGPMTPQSTNSSMTEDLKPP
TPVSAPHGQMTQIQGNRNNAISVQDPFSDVSDPAFQKRTSMTPNPQYQSGINMPEMMGRM
GYEPNKDPFAGMRKVPGSNDPFMPPGVMPNSGMQDLYNRTPSAAMANMSMGQRQQYTYGP
GYDRRPEHGMGPEGSMGPPGGQSNVVPSSNDPSMYSPNRYPPQQRHDPYGQQYPGQGPPS
GQPPYGSHQPGMYPQQQNYKRPMEGMYGPPPKRHENDMYNMQYSSQQQEMYNQYGNTYSG
PDRRSMQSQYPLTYNRDRIQGPVSMQQHTIPPQMIGGPMQAASTEVPQQGMWQSRNDMPY
PYPNRQGPGAPPQASPYTGMNRTDEMILPDQRMNHEGQWPSHVNQRQSSYMSPSASMPPI
TRPPQSSYQTPPSMPNHISRAPSPAPFQRSLENRMSPNKTPYMSSIKMQKVGPPVPASHV
AVQHQPPPIRREITFPPGSVEATPPMLKPRRKLTSKDTGAPEAWRVMMSLKSGLLAESTW
ALDTINILLYDDSTVATFNLSQLSGFLELLVEYFRRCLIEIFGILKEYEVGDPRQKALLD
PDAFQKDDDSLSEDEMGKEEEEDDIDDEDEDEEEGDGRSLSEENRVAFATSVAQSGDEKP
KQASKFDRLPLKIMKKKDLFVVDRSSKLGRVQQFDSGLLHWQIGGGDTTEHIQTHFESKM
ELPSRKRAVGCSNPPNKERKTREHGDKETVNAEEQREKSITATIDDVLSARQGALSEEHS
NDSAPVTEGSNFPFRIHQAKNHKNIKLLEDEPCSRDETPLCSISGWQDSLAKRCICVSNI
VRSLSFVPGNDAEMSKHSGLILILGKLILLHHTHPERKRAPQTYEKEEEEDDGVACNKDE
WWWDCLEVLRENTLVTLANISGQLDLSIYPESICLPILDGLLHWMVCPSAEAQDTFPTVG
LNSFLSPQRLVLETLCKLSIQDNNVDLILATAPFSRQEKLYATLVRYVGDRRISVCREMS
VALLSNLAQGDTLVARAVSVQKGSISNLISFLEDGLTVAQLQHSQPNLMHMQPIEPTSVD
MMCRAAKALLAMARVEENHSEFVLYEGRLLDISISSVLNSMVASVICDVLFMIGQL
NT seq
6831 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggccgctcaagtagcagcagctccggccaacagtaacaacaacaacggctcc
agtggaggcggcggcagccccggcggctccagcagcggcagcctgagcggccgcgaatcc
gacatcaacaacggcagcaagtcggtggcgatggcggcggcttcttcttcccctccttcc
tcagcagcggcggcgggtctgggactcgcactgagcggcggcgaagggctgacactcaac
agcgttgatcaccctcgccttcccctccgccatcatcaccatcatcatcaccagccgccg
ccgccgggacagggagagcccgggatgatgggacactcggcggttcccggcgacaacaat
aacaacaacaacggcggcggaggaggtggaggcggcggcggctcctcgtcgtcggcctcg
tccaacaacagcgaccccgaccccgagctgccgcctcacaaagacaccgcctcggcctcg
ccttctgccggatccaactcgtcgccttcttcctcctcctcctcctcctgctccggggca
gtgatggcggccccagagccgggtctgatgatccccaatcatcacaagctaaagccggcg
gcgggtgacctgcagctgctgccgcctcccccccatcaccagggagaaggagagggaggc
ggcggagcggacagtcaacatggaggcggcggcggcaaagacagtggcggcgggttgtta
gcggccgacggtcaaggcaacaacaacagcggcggcggcggcgggggcaagaccgacgag
gagctgctcaaaatgggcgaccagagatacgagcacccggcggcggctactccgggccaa
ggccagggccaaagcctgggcctagcgccgggattggccgactataactactaccgagcg
ggcagtgcaggagcaggaggccccggccccgggccttatttcgatcaacatggcggacaa
caaagccccggactcggccttcacccgtcccctggcccggctcaggctcaggcctcgggt
caggagttacaggccggcggtgttagtgtcagccccagcccgctacacaactcccacgac
ggctactcgagcaacaacagctacaaccaccattactcggcctacaggccgacctacagc
agcgggcccgccgcctacagcatgctcagctctccccgggccaacagcagccccggcctc
caccaccacccgcaccatcaccaccctcacctgggcaacaagcagcagccgctacagccc
gcggccgccttccagcgcttctcgctgcagaaccagcactcggggggagccacgccgacc
ctcaaccaactgctcacctcccccagccccgccatgaggggctacggcttcccggactac
ggcagcgccgccgccgctgctgcgggggcttctcaggcctcgctgaaagttagcagcggc
ggcggcagcagcgacatcatggccagtcagtatggagtagcgagtagccagggctgggga
tcggcggcgggaggacaaccaggccggagcccccaccccgccatgagcccaggcagcacg
gcacagcctctgggcagagcgcaggccaatccaatggaacagatgggtatgaagagatat
gggatgagcaacaatccttattcacagcagcaacagagcggaccctatcctgggcagcca
tatgggccttcgacagcacagcggtacccaatgggtatgcaggccaggacccaaagcagc
atggcagcaatgcagtatccacagcaacagcagatgcccccacagtacactcagcaaggt
atgagtggctactgccaacagggacagcagccttattacaaccagcaacagcagcagcag
ccgcctccctatatacaacagagataccaatcccaacaggatatgtctcaggaaggttat
ggagcccgcactgcaccaccattgacacctagcaaacccaaccatgaagacatgagcctt
ttacaacaggagcgaccttccagcttacctgatttgtcaggatccattgatgatttgcca
acagggacggaaggaacattaagttctggagttagtgcgtcaggatcctcaagtggccaa
ggagaacagagcaaccctgcacaatctcccttctcccctcacgcctcacctcatctctct
ggtatccgtggcccatcaccctctcctgttggctctcctgttgggagtaaccagtccagg
tcgggaccgctttcccctgcaggtgtaccaggcaatcagatggcacctcagccaccgagt
aaccagttagatgtcggctcccatcctgccatgagtcaatcccctatgtcacaggagcga
gggtttatgtcaaacatgcagcgaaacacacaaatgacacagtatgcatcccagcaaacc
gtgccttccatgtctccacatccttcgccaggaggtcagatacatccagggatgggtcct
taccagcagagcaactccagcagcacttatggctcccagagtggccagtatggaccacaa
ggaaattatcccagaccgccaaattatggagcagttccaaacaccaactacagtggtcct
ggtccaggcatgggcaacagcatgagtatgactgtcaacaaccagatgcatgggcagggc
ccagctcagccttgcagtaacatgacagtggggaggatgccaccgtcagggatgtccaac
tggccctacacaggcaacatgacctcaaattctcccaacatgtcacagcagcagcagatg
gtggtgggggcaggaatggggccaccgatggggactgtgaaccgcaaagcacaggaggcg
gctgccgcagtgatgcaagcagcggcaaactcagcccaaaacaggcaagctggatacact
ggtatgaaccaaagtggtatcatgggctctagctccccttacagccagtctatgaacaac
agctctgtcctgatgaaccctcaggcagctccctacaacatggtcaacagctcctcagct
tcaatgagtcttggaacagacatgatgacccaaggggaatccaaactgcctgtagctcaa
aaattggacagcaaagaagatgggccaccttcatctgagaccaagtctaagaagtcaaac
tcatccacaaccggtgagaagattgccaggctgtatgatctgggggttgagcaggatcgc
aagatatggattgaccgttatctgtcttttatggaagagagaggaacaccggttgccagc
ctacctgccgtgggcaaaaaaccactggacctttaccgactctatgcctgtgtgaaggaa
atcggtggtctggcacaggttaacaaaaacaaaaaatggcgtgagctggcgaccaccctg
tgcgtgggcacgtcctcgagcgcagctagctctctgaagaagcagtacatccagtacctg
tttgcctttgaatgtaagattgaacgtggagaggagccacctcctgagatgttcactcct
gcagaatccaaaaaacagcccaagatccaaccaccatcgccagctggttcaggctctttg
caagggccaatgactccacagtccaccaacagctcaatgacagaagacctgaagccccca
acacctgtatcagcaccacacgggcagatgacgcagatccaggggaacaggaacaatgca
atcagtgtccaggaccccttctctgatgttagtgacccagccttccagaagaggacttcc
atgacgcccaacccacagtaccaatcggggatcaacatgccggaaatgatgggaaggatg
gggtacgaacccaataaggacccattcgctgggatgagaaaagtgcctgggagtaatgac
ccctttatgcctcctggagtgatgcctaatagtgggatgcaggatctgtacaaccgtacg
ccatctgcagcaatggccaacatgagcatgggccaaaggcagcagtacacttatggacct
ggctatgatagaaggcctgagcatgggatgggtcctgaaggcagtatgggacctccagga
ggtcagtctaacgtggtgccttccagcaatgacccgagcatgtactcaccaaatcgttac
cctccacaacaaaggcacgatccctatggacagcagtacccaggccaaggccctccctcg
ggacagccaccatatggaagtcatcagcctggaatgtatcctcagcagcagaactataaa
cgtcccatggagggcatgtacggtcctccaccaaagcgtcatgagaatgacatgtacaac
atgcagtacagcagccagcaacaggaaatgtacaatcaatatggaaacacctattctgga
ccagacaggaggtccatgcaaagccaatacccattgacatacaacagagacaggatccag
ggtccagtttccatgcaacagcatacaataccaccccaaatgattggagggccaatgcaa
gcagcctcaaccgaagtgccacagcagggcatgtggcagtcacggaatgatatgccttac
ccttaccccaatagacaaggccctggagcacctccgcaagcatcaccatatacagggatg
aatcgcactgatgagatgatcttacccgaccagagaatgaatcatgaaggtcaatggcct
tcccacgtgaatcagcgccagtcttcatacatgtctccttcagcctccatgcctccgatc
acacgacctccgcagtcctcctatcagacacctccttcgatgccaaaccacatctccagg
gctcccagcccagcgcctttccagcgctcgctagaaaatcgaatgtcccccaacaagacg
ccctatatgtcatcgatcaagatgcagaaagttggtcctccagtcccggcctcacacgtt
gctgttcaacatcaaccaccaccaataaggcgggaaatcaccttccctccaggatcagtg
gaggcaacgccgccaatgttaaaacccagacgaaaacttacctcaaaagacactggagcc
ccagaggcctggcgtgttatgatgtccctcaaatctggtcttctggctgaaagcacttgg
gctctggacaccatcaacatcttactgtacgatgacagcactgtagccacatttaacctc
tctcagttgtcagggttcttggagcttttggtggagtatttcagaagatgcttgatagaa
atatttggaatattaaaggaatacgaggttggggatccacgtcagaaagctctcctggat
ccagatgcatttcagaaggatgatgacagccttagtgaggacgagatggggaaagaggag
gaagaggacgatattgatgatgaagatgaggacgaggaggagggagacggcagatcattg
agcgaggagaaccgagtcgcctttgcaacgagcgttgcacaatccggtgacgaaaagcca
aaacaagccagtaaatttgaccggcttccattgaagatcatgaagaagaaggatctcttt
gtggttgaccgctcgagtaagcttggccgcgttcaacagtttgacagtggactgcttcac
tggcaaatcggtgggggtgacacaacagagcacatccaaacccattttgagagcaagatg
gaattgccgtcacgcaagagagctgtagggtgttcaaatcctccaaacaaagagaggaaa
accagggaacatggggacaaggaaacggtgaatgcagaagagcagagagagaagagtata
acagcgactatagatgatgtattgtcagctcgtcagggagccttgtcagaagagcattcc
aacgactcagctcccgtcacagaaggcagtaatttcccctttcgcatccaccaagcaaaa
aaccacaaaaatataaaattattggaggatgagccttgcagccgtgacgagacgccgttg
tgctcgatctctggttggcaggactccttggcaaagcgctgtatctgtgtgtcaaatata
gttcgtagcttgtctttcgtgcctggcaatgatgctgagatgtccaagcactcgggcctc
atactgatcctgggaaagctgatcttgcttcatcacacacatccggagaggaaacgggca
ccacagacgtatgagaaggaggaggaggaggacgatggagtggcctgcaacaaggatgaa
tggtggtgggactgccttgaggttttacgagagaacaccttagttacgttagccaacatt
tctgggcagctagacctgtctatatacccagagagcatttgtttgccaattttggatggt
ttgctacactggatggtatgtccctctgcagaagcccaggatactttcccaacagtggga
cttaattcattcctctcaccgcagagacttgtgttggagaccttgtgtaaactcagcatc
caggacaataatgtggatctcatcttggctaccgcccctttcagccgtcaggagaaattg
tacgctactctggttagatacgtgggagatcggagaatctcagtctgccgagagatgtca
gtggctctgttgtcaaaccttgcccagggggacacgttagtggcgagggctgtttctgtg
caaaagggaagcatcagcaacctgataagtttccttgaggatggcctcacagtggcccag
cttcagcacagtcagccaaacctgatgcacatgcagcccattgagccaacaagcgtggac
atgatgtgtagggcagccaaggccctgctggctatggctagagtagaagagaaccactcg
gaatttgttttatacgagggccgcttgctagatatctcaatatcatctgttctgaactct
atggttgcatcagtcatttgtgatgttctgttcatgattggtcagttatga
DBGET
integrated database retrieval system
