KEGG   Callorhinchus milii (elephant shark): 103186563
Entry
103186563         CDS       T03088                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103186563 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmk03019]
    103186563 (exosc1)
Messenger RNA biogenesis [BR:cmk03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     103186563 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     103186563 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1 Pollen_Ole_e_1
Other DBs
NCBI-GeneID: 103186563
NCBI-ProteinID: XP_007903861
LinkDB
Position
Unknown
AA seq 194 aa
MAPLKLCIPGERLCSIEDGTPTSGTYSRHGYIFASLAGYVVKKNDNGPVPAISVVRDTEA
QLLPEVGVVVTCKVTSINPRFAKVSILYVGSTPLKGAFRGTIRREDIRATEKDKLEIYKC
FRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPRTHGKE
FRKVARVQPEFLQT
NT seq 585 nt   +upstreamnt  +downstreamnt
atggcgccgctcaagctctgcattcccggggagaggttgtgtagtatagaggacggcact
ccgaccagcggcacctactccaggcacggctacatcttcgcctctctggccggctatgta
gtgaagaagaacgacaatggcccggtaccggcgatctcagttgtgcgggacacagaggct
cagctcctcccggaggttggagtggtggtcacgtgtaaggtgaccagcatcaacccccgg
tttgcgaaggtttccattctgtacgtggggtccactccgctgaagggggctttcagagga
accataaggagagaagacattcgagccacggagaaagacaagcttgaaatctacaagtgt
ttccgacctggggacatcgtgctggccaaagtgatctcactgggcgacgctcagtctaac
tacctgctgacgacggcggaaaatgagctgggggtggtggtggcccacagtgaggcgggt
gctcagatggtgccgatcagctggtgtgagatgcagtgcccacggacacacggcaaggag
ttccgcaaagtcgctcgagtccagcccgagttcctgcagacgtga

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