Callorhinchus milii (elephant shark): 103187917
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Entry
103187917 CDS
T03088
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03013
Nucleocytoplasmic transport
cmk03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103187917 (upf2)
03015 mRNA surveillance pathway
103187917 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmk03019
]
103187917 (upf2)
Messenger RNA biogenesis [BR:
cmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103187917 (upf2)
mRNA cycle factors
P-body specific factors
103187917 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
103187917
NCBI-ProteinID:
XP_042191215
LinkDB
All DBs
Position
Unknown
AA seq
1293 aa
AA seq
DB search
MSERERKSKRMPGEHKKPVNMEEKESSVFSTENRSSKDKESTERRVSSNRDKGRDDSKGS
SRRESVKAVDEKKKRQEDEKRKKEDEKRRKKEEEKLKAEEEQRKKEEEEKQKLEEDERRK
QEEEERRQREEEAARQREMEEAHQLHQEAWERHQARVELRSKNQGAHEGRPEESFFTRLD
SSLKKNTAFVKKLRTITEQQRDSLSSDFNSLNLSKYIAEAVASVVEAKLKLSDVNCAVHL
CSLFHLRYVDFAPLLLQAWKKHFEARREEKTPNISKLRTDLRFIAELTIVGIFTDKEGLS
LIYEQLKNIINADRDSHTHVSVVISFCRHCGDDIPGLVTRKMKLASEKYSLSFPPSEIIN
AEKQQPFMNLLREYFTSLTKHLKKDHRELQNLERQNRRILHSKGELSEDRHKQYEEFATS
YQKLLANTQSLTDLLDENMPELPQDKSAQEEHGTGIDIFTPGKPGEYDLDGGIWEDEDAR
NFYENLIDLKVFVPAILFKDNEKSKDSSKEEPKDPKDAKDSKEVAPAEELDLELENLDIN
DEIMEDEGVDEPEDLTQKILEEHEQEDEETSTGSHLKLIVDAFLQQLPNCVNRDLIDKAA
MDFCMNMNTKANRRKLVRALFTVPRQRLDLLPFYARLVATLHPCMSDLAEDLCAMLKGDF
RFHVRKKDQINIETKNKTVRFIGELTKFKMFMKNDSLHCLKMLLSDFSHHHIEMACTLLE
TTGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPVEKTVRKKR
PPLQEYIRKLLYKDLSKVTTEKVLRQMRKLAWQDPEVKEYVINCMINIWNVKYNSIHCVA
NLLAGLVPYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSVKFLGELYNYRMVESAV
IFRILYSFITFGVSTDGSATPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLVY
FQRYIWWKKTLAVWTKDHPFPIDVDYMISDILELLRPKMKFCSSTEDALKQVQELEREFL
IKLGLVIDGKESKSEKLSHIGEGEENQDDDDDEEEEEGGGGETEEQSGNESEMNEHEEED
ASENEEEEEEEEEENTDYMTDSNKENETDEDNNEVMMKGGGLKRLPCAEDEEFIQALDKM
MLENLQQRSGESVKVHQLDVAIPLQLKSQLKKGPPPPGGGEGDSETSETMQFVMLTRKGN
KQQFKILNVPMNSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRP
APANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaagggagaggaaaagtaaaagaatgccaggggagcacaagaaacctgtaaac
atggaagagaaggagtcctcggttttcagcacagagaatcggagcagtaaagacaaagag
agcacggagaggagggtctcctcaaaccgagacaagggccgcgacgattccaaaggcagc
agcagaagggagagcgtcaaggctgtcgatgagaagaagaagaggcaagaggacgagaag
cgaaagaaggaagatgagaagcgcaggaagaaggaggaggagaagctgaaagcggaagaa
gagcagcgcaagaaggaggaggaagagaagcagaaactcgaagaggatgaaaggcggaaa
caggaagaagaggagagaaggcagcgggaagaggaagcagctcgtcaaagagaaatggaa
gaagcgcatcagctgcatcaggaggcttgggagcgccatcaggccagggtggaactccgc
agcaagaatcagggcgcacacgaggggcgccccgaggagagcttcttcaccaggctggac
tccagcctgaagaaaaacaccgccttcgtcaagaagctgaggaccataaccgagcagcaa
agagactctctgtccagcgacttcaacagccttaacctgagcaagtacattgcggaggct
gtggcctcggtcgtggaagccaaactgaaattgtccgacgtgaactgcgccgttcacctg
tgttccctcttccacctgcgctacgtggactttgcccctctgctcctccaggcctggaag
aagcacttcgaagccaggagggaggagaaaactcccaacatcagcaaactgagaacggac
ctgcgcttcatcgccgagctgactatcgtggggattttcaccgacaaggaggggctgtcg
ctcatctacgagcagctgaagaacatcatcaacgcggaccgcgactcccacacgcacgtg
tccgttgtcatcagtttctgccgtcactgcggagacgatatccccggcctggtgaccagg
aagatgaagctggcctcggagaagtacagcctgagcttcccccccagcgagatcatcaac
gctgagaagcagcagcccttcatgaacctcctgagagagtacttcacctcgctcaccaaa
cacctcaagaaagatcaccgcgagctgcagaatttggagaggcagaacaggcgaatctta
cattcgaaaggggagctgagtgaagatcgacacaaacagtacgaggaatttgccacctcc
taccagaagctgctggctaacacccagagtctcactgacctgctggatgagaacatgcca
gagctaccccaagataaatccgcacaggaagagcacggcaccggcattgacatctttacg
cctggaaaacctggagagtatgacttggatggcggaatctgggaggatgaggatgcccgg
aatttctacgagaacctcattgacctgaaggtctttgtgccagccatattgttcaaagac
aatgaaaagagcaaagactccagcaaggaagaaccgaaagatcccaaggatgcaaaagac
tccaaagaggtggccccagcagaggagctggatttggaattggagaatctggatattaat
gatgaaattatggaagatgaaggagtagatgagcctgaggaccttactcagaagattttg
gaagaacatgagcaagaggatgaagaaaccagcactggttcacacctcaaactgatagtg
gacgcgtttctccagcagttacccaactgcgtcaaccgtgacttgatagacaaggctgca
atggatttctgcatgaacatgaacacgaaagctaacaggaggaagctggtgcgagctctg
ttcaccgtgcccaggcagagattggacttgcttccgttttacgcccgtctagttgccact
ttgcacccgtgcatgtctgatttggccgaggacctgtgtgccatgttgaagggggacttt
cgatttcacgtcaggaagaaggatcagatcaatattgaaacaaagaataagaccgtgcgc
tttatcggggagcttacaaagtttaaaatgttcatgaagaatgattctctgcattgcctg
aagatgcttttgtctgatttttcccaccatcacatcgagatggcttgcacacttctggaa
acaaccggccgctttctcttccgatctcctgaatcgcatttgaggaccagcgttctcctg
gaacaaatgatgcgcaagaaacaggccatgcacttagatgcccgctatgttaccatggtg
gaaaatgcttactactactgcaatcccccgcctgtggagaaaacggtgaggaagaaacgg
cctccccttcaggaatacatccgcaagcttctgtacaaagacttgtccaaagtcaccaca
gaaaaggtgttgagacagatgaggaagttggcctggcaggacccagaagtgaaggagtac
gttattaactgtatgatcaacatctggaatgtgaaatacaacagcatccactgcgtggct
aacctgctggcaggattggtgccctatcaggaagacgtgggaattcacgtggtggatgga
gtgctggaggacatccgactgggaatggaggtcaaccagcccaaatttaaccagcggcgt
ataagcagcgtgaagttcctgggggagctgtacaattatagaatggtggagtcggcggtc
atcttccgaattctttattccttcatcacgttcggcgtgagcacggacggcagcgcaaca
cctctggaccccccggaacacttattccgaatccgtctggtctgcaccttgctggacact
tgcggacagtattttgatcgagggtccagcaaacgcaagctggactgtttccttgtatat
tttcagcgttacatctggtggaaaaagactttagcggtgtggacaaaggaccaccccttc
ccaatcgacgttgactacatgatcagcgacatcctcgagctcctccgaccgaagatgaag
ttctgcagctccaccgaggatgccctcaagcaggttcaagagcttgagcgggaattcctg
atcaaactggggctcgtcatcgatgggaaggaatccaagtcggaaaagctctcccatatc
ggagaaggggaggaaaaccaagatgacgatgatgacgaagaggaagaggaaggcggagga
ggagagacggaggagcagtccggcaacgagagtgaaatgaacgagcatgaagaagaggat
gcttctgagaacgaggaggaagaggaggaggaggaggaagagaataccgattatatgacc
gactccaataaagaaaatgaaaccgatgaagataataacgaggtaatgatgaagggtgga
gggctcaagcggctgccttgtgccgaagatgaagaatttattcaggctttggataaaatg
atgcttgaaaatctgcagcagcggagcggtgagtcggtcaaggtgcaccagctggacgta
gccattcccctgcagctgaagagccagctgaagaaaggccccccacctccaggaggggga
gagggggattccgaaacctcggagaccatgcagttcgtgatgctgaccaggaagggcaac
aagcagcagtttaagatcctgaatgtaccgatgaactcccagctcgccgcaaaccactgg
aaccagcagcaggcggagcaggaggagagaatgcgcatgaagaagctaacgctggacatc
aatgagcgtcaggaacaggaagattatcaggagatgttacagtcgttggctcagcgaccg
gctccagcgaacaccaatcgggagcgacggcctcgataccagcatcctaaaggagcaccg
aacgctgatcttatcttcaagactgggggaaggcgacgttga
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integrated database retrieval system
