Callorhinchus milii (elephant shark): 103187938
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Entry
103187938 CDS
T03088
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X3
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103187938 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cmk04131
]
103187938 (vps8)
Membrane trafficking [BR:
cmk04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
103187938 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
Clathrin
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_UBOX
zf-RING_2
WDR55
EIF3I
zf-C3H2C3
PHD_4
Motif
Other DBs
NCBI-GeneID:
103187938
NCBI-ProteinID:
XP_007905866
LinkDB
All DBs
Position
Unknown
AA seq
1398 aa
AA seq
DB search
MSESPDARSLLSSSSQLNLTDIDGIDDKEFDIPQVDTPPTLESILNEAEDEEELFILEDP
ALLNTDNIDAHSIETSSLASSDSGDRTHLRRRKKVTEATSSIHGSVVRQSILKGVSAQIV
SAADRVDAGLPTAVVVSNVIAVGTSHGLALIFDPNQALRLCLGSTSVGAQYGAVSALSIN
SDCTRLLCGFAKGQITMWDLANGKLLRTIMDAHPPGTAILHIKFTDDPTVAICNDSGGSV
FELTFKRVMGTRTCESRCLFSGAKGEVCCIQPLLVKAELRDHPITQYGLLAMASLTKVLV
IGLKPSLKVWLTFPYGKTNPASVPLLSWHFIAVQNAVTPMLAFCRGGTIHFLLVKKDESG
AVHVSKQKQLHLSYELINLTWINSRTLALLDSAEKLHVVDRHSQEELEMVDMAEVQLVYN
SSHFKSLATGGNVSQALALVGEKACYQSVGSYGAQIIYLGTKSVHIITLRTWRERMDCLL
KQERFTEVLALAWSFHEGKAKAVVGLFGDQSKRQGVIADRMVEILIQFADRALRKCPDQG
KIQVMEQHFQDMVPVMVDYCLLLDRTDLLFGQIYSKLSEISVAKGVFIECLEPYVLTDKL
TSITPQVMKDMLIHFQDKGMMETIEACIVHMDVTSLDIQQVVGMCWEHHLHDAMIYVYNR
GMNDYIMPMEKLFQIIGPSLRAGKSLSDEQVIMGNKLLVYISCCLAGRAYPLGNIPEDLV
PLVKNQVFEFLIRLHSTEVAPDEEIYPHIRTLLHFDTREFLNVLALTFENFQSDKQAVEH
QQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCSPDD
ESRHAERQQVLLELLQAGGVVQFDENRLVTMAEKAAFYQVCEFMYEKQQLYDKIIFCYLN
DPVRKEEIFNYVHNMLSIPGYSAEDKASVWSKTIEHSKDLVAINPSKAAELVATHFTTEL
GSILEKLEDQHLLFLLLQNLLNPTDGGQVNRELQRNPQIHEKYIDLLCQFQPDRIPDFLR
LSEHYRLEEATQITKRHQLHEATAYLLEKKGDVHGAFQVLLEILKRKLSLLTENEGEHSE
ELVQATESTLEETIGLCQRNSHSLNQQQREALWFPLLEAVMSTQKLLKDGSSSPAFESLK
HLTKQVLNSMTGFIALPSILQRILQDPMYGKGKLGEIQGLILGMLDTFNYEQTLLETTTN
LLNHDLHWSLSNLRAAVSRGLNPKQEHCGICLQQYKRRQEGTEEVIVFSCGHIYHSQCLH
NKNCGVQTDGQTRWLCYKCNSSNKGGRHRDMGSEVNRGRSTSLAQIKVTSAYYSTSRDSD
NKKPTEMTLDLQQLQAFDELRRLYRGPSRLAILTELSRNRGGNKQGLLHATSTHSITNSI
FQNENFQLRLSPPPLAEE
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagtcgcctgacgcccgcagcctactgtcctcgtcttcccagctaaacctgacc
gacattgacgggattgacgacaaggagtttgatattccccaggttgatactccacctact
ctcgaaagcatactcaatgaggcagaagatgaagaagaattgtttatattggaggacccg
gcattgctgaataccgataacattgatgcacactcgattgagacctcgtctcttgccagc
tcagatagtggggaccgaacgcacttaagacgaaggaaaaaagtgacagaggccacctca
tccattcatggttcagtggttcggcaatcaattcttaaaggagtttctgcacagattgtg
tctgccgcagacagagtcgatgcaggtttacccactgctgttgttgtgtcgaatgtaata
gcagtgggaacatcacatggattggcactcatatttgatccgaaccaggcactgcggctg
tgcctgggcagcacatcagtaggcgctcaatatggagcggtgtctgcacttagcattaac
agtgactgcactcggctactctgtgggttcgccaaagggcagattactatgtgggacctg
gcgaatggcaagctgttgaggacaataatggatgcccacccaccaggaacagctatcctg
cacataaagttcaccgatgacccaacagtagccatatgtaatgacagtggaggctcggtg
tttgaactcactttcaagagagtgatgggaacgaggacgtgtgagtctcgctgtttgttc
agcggagccaaaggagaggtttgctgcattcaacccttactagtaaaggcagagctgaga
gatcatccgattacacaatatggactattggcaatggcttctttaacaaaggtattggtg
attggattgaagccctctcttaaagtctggctgacatttccatatggaaagacaaatcca
gcaagcgttccccttttatcctggcatttcattgcagtgcagaacgcagtgactcccatg
ctcgccttttgtagaggaggcaccatccactttcttctggtaaagaaggatgaatctgga
gctgtacacgtgagcaaacagaaacaactgcatctgagctatgaactgatcaatttaacg
tggatcaattctcggacgttagctcttctggatagtgcagagaagttgcacgtggtggat
cgtcacagtcaggaggagctggagatggtggacatggcagaagttcagcttgtctacaac
agcagccacttcaagtctctggctactggtgggaatgtcagccaggctctggcactggtc
ggagaaaaggcatgttaccagtcagtcggcagttacggagcacaaatcatctatctggga
actaagtccgttcacattattactctgaggacctggcgagagaggatggattgccttttg
aaacaggagagattcaccgaggtgctggctctggcctggtccttccatgagggaaaagcc
aaggcagtagttgggttgttcggagaccagagcaagcgacagggtgtcatagctgaccgg
atggtagaaattctgattcagtttgcagaccgagctctgaggaagtgtcctgatcagggc
aaaattcaggtcatggagcagcatttccaggacatggtgcctgtcatggttgattattgt
cttctgctcgatcgcacagatcttctattcggccagatctacagtaaattgagcgagatc
tcagtggcgaagggagtattcattgagtgcctggagccctacgttttgactgacaagcta
accagcatcacacctcaggtgatgaaggatatgctcattcactttcaggacaagggcatg
atggagactattgaggcctgcatagtgcacatggatgtgactagcttagatattcagcag
gtggtcgggatgtgctgggaacaccacctgcacgatgccatgatctacgtgtacaacaga
ggaatgaatgactacatcatgccaatggagaaattgttccagattattggaccctctctc
agggctggtaaatcactctcagatgaacaagtgatcatgggcaataaattgctggtgtat
attagctgctgccttgctggccgagcctaccctctgggtaatattcctgaggacctggta
ccactggtcaagaatcaggtgtttgaatttctgatccgcttacactccactgaagtagct
cctgacgaggagatctaccctcatatccgaacactccttcacttcgatacccgggagttc
ctcaatgtattggccctgacctttgaaaactttcagagtgacaagcaagcagtggagcat
caacagaggattgtggacatcctgctgaaggtgatggtggagaattcagacttcactccg
tcgcaggttgggtgtctcttcaccttcctggcccggcagctggcaaagcccgacaataca
ctttttgtcaaccggaagctttttgaccaggtacttgaatttttgtgtagccctgatgat
gagtctcgacatgctgaaaggcaacaggtccttctggagctgcttcaggctggtggtgtt
gtgcaatttgatgagaacaggctggtcactatggctgagaaagctgcattttaccaagtg
tgtgagtttatgtatgaaaagcagcaactgtacgacaagattattttctgctacttgaac
gacccagtcaggaaggaggaaattttcaattacgtgcacaatatgttatccatacctggg
tacagtgctgaggacaaagcgtcagtgtggagtaaaaccatagaacacagcaaggacctg
gtggctataaatccttcaaaagcggcagaactggttgcaacccatttcactacagagctc
gggtccatcctggagaagttagaggatcaacatttactctttttattactgcagaatcta
ctaaatcctacggatggagggcaggtgaatcgcgagctgcaaaggaatccccaaatccat
gagaagtacattgacctcttgtgccagttccaaccagatcgcatcccagatttcctgagg
ttatcagagcattaccggctagaagaagccactcagattacaaagagacatcagcttcat
gaagccacagcctacctgctggaaaagaagggagatgtgcatggagcttttcaagtcttg
ctggagattttgaagcgtaagctgtctttacttacagagaatgaaggagagcacagtgaa
gagctggtacaagctacagaaagcacgttggaggaaaccattggtttgtgtcaacgaaat
tcacacagcctgaatcagcagcagcgagaggccctatggtttcccttgctcgaggctgtt
atgtcaacgcaaaaactattgaaagatggatcatccagcccagccttcgaatctttgaag
cacttgacaaagcaagttctgaacagcatgacaggattcatagcgcttccatccatcttg
caacgaattttacaggatccaatgtacgggaaagggaaactgggagaaatccagggccta
atactgggaatgttggacacgttcaattatgaacagacgctgctggagaccacaaccaac
ctcctgaaccatgatctgcactggtcgctctccaacctgcgtgctgctgtcagccggggc
ctgaaccccaaacaagagcactgcggcatctgtctgcagcagtacaagaggaggcaggag
ggcacagaggaggtcatcgtgttcagctgtggccatatctaccattcgcagtgtctccac
aacaagaactgcggcgtgcagaccgatggccagaccagatggttatgctacaagtgtaac
tctagtaacaaaggaggacgacacagagacatggggtcagaagttaacaggggcagaagc
acttcccttgcacagattaaagtgacttctgcctattactccaccagccgggattccgat
aataaaaagcccacagagatgactctggacctgcagcaactacaagccttcgatgagctc
cgccgcctgtacagaggcccctccaggcttgcaattctgaccgaactctcccggaaccga
ggcggcaacaagcaggggctgctccacgccacctccacccactccatcaccaacagcatc
tttcagaacgagaacttccagcttcgtctctccccccctcccctcgccgaggagtaa
DBGET
integrated database retrieval system
