Callorhinchus milii (elephant shark): 103188005
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Entry
103188005 CDS
T03088
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
cmk
Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cmk03009
]
103188005 (ddx55)
Enzymes [BR:
cmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103188005 (ddx55)
Ribosome biogenesis [BR:
cmk03009
]
Eukaryotic type
Pre-60S particles
Helicases
103188005 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
CTT_SPB4
ResIII
Helicase_C_2
SBF_like
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103188005
NCBI-ProteinID:
XP_007905982
LinkDB
All DBs
Position
Unknown
AA seq
581 aa
AA seq
DB search
MADPGDGRWESLAAGLSEGVTRALGELGFTHMTPVQSATIPLFMSNKDVAAEAVTGSGKT
LAFVIPILEILLRREEKLKKHQVGALVITPTRELAIQIDGVMRHFTSHYPQFSQMLFIGG
NNPIEDVEKFIKFGGNIVVGTPGRLEDMFRRKADGLDLTSCVKTLDVLVLDEADRLLDMG
FQISLNTILGNLPKQRRTGLFSATQTQEVEKLVRAGLRNPVRITVKEKGVAASNTQKTPT
RLNNYYMICRPEEKFNQLVAFLRQHKQQKHLVFFSTCACVEYYGKALDLLVKNVKILCIH
GKMKHKRNKIFTEFRQLPSGILVCTDVMARGIDIPEVHWVLQYDPPSNASAFVHRCGRTA
RIGHGGSALVLLLPMEESYVNFLSINQKCPMEEMSSLREVPDVLPRLRKAALGDRAVFEK
GMKAFVSFVQSYAKHECSLIFRTKDLDFAALAKSFALLRLPKMPELKGKHFPDFVPEDVD
TNSIPYKDKVREKQRKKLLAEKQLERQQNEGKRTFVRNKPWSKQKDKKDKKRKRVAKRQR
EEGCDMKDEDMDELLKDTRLLKKLKKGKISKEEFEKELTGT
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccgggcgacggccggtgggagagtttggcggccgggctgagcgagggggtg
acgagggcgctcggggagctgggcttcacgcacatgaccccggtgcagtccgcaacaatc
ccactgtttatgagcaacaaagatgtggcagcagaagctgtcactggcagtgggaaaacc
ctggcgtttgtcattcctattctggaaattcttctaaggcgggaagagaaactgaagaaa
caccaggtcggtgcactcgttataactcccacacgagagctcgcaatccagatcgacggg
gtaatgagacacttcaccagccattacccacagtttagtcagatgcttttcatcggtggg
aacaatccgatcgaagatgttgagaagtttatcaagtttggagggaacatcgtggtgggg
actcccggccgcctggaagacatgttccggaggaaggctgacggactggacctgacctcc
tgtgtgaagacgctggatgtgctggtgctggacgaggctgacaggctgctggacatgggc
ttccagatcagcctgaacactatcctgggaaatctgcccaagcagcggcgcacgggcctt
ttctcggccactcagacccaggaggtggagaagctggtgcgagccggcttacgcaacccg
gtgcgcatcaccgtgaaggagaagggagtggccgcaagcaacacacagaaaacaccaact
cgactgaacaattactacatgatctgccgcccggaggagaagttcaaccaattggtggcc
ttccttcgccaacataaacagcagaaacacctggtcttcttcagcacatgtgcatgtgtg
gagtactacggcaaagccctggacttgctggtgaagaatgtgaagatcctgtgtattcat
gggaaaatgaagcacaaacgcaacaagattttcaccgaattccgccagctaccaagcggg
atcctggtttgcacggacgttatggctcgaggcattgacatcccggaggtgcactgggtg
ctgcagtatgaccctcccagcaacgccagcgcctttgtccatcgctgcggacgcacagcc
cggatcggccacggcggcagcgccctggtcctgctgctccccatggaggagagttatgtc
aactttctgtccatcaaccagaaatgtccgatggaggagatgtcatcactgagggaggtg
ccggacgtgctgccgaggctgaggaaggcggcgctgggcgaccgggcggtgttcgagaag
ggaatgaaagcttttgtctccttcgttcagtcttacgccaagcacgagtgcagcctgatc
ttcaggacaaaggatctggactttgctgcgcttgccaagagctttgctttgctgagattg
cccaagatgccagagctgaaagggaaacatttccccgactttgttcccgaggacgtggac
acgaacagtatcccgtataaggacaaggtgagggagaagcagaggaagaagctgctggcg
gagaagcagctggaaaggcagcaaaatgaaggaaagaggacattcgtaaggaacaaaccg
tggtccaagcagaaagacaaaaaggacaagaaaaggaaacgggtggccaaacggcaaaga
gaggagggctgcgacatgaaggacgaggacatggacgagcttctgaaggacacacggtta
ttgaagaagctgaagaaagggaagatcagcaaggaggagtttgagaaagagctgacaggc
acgtga
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