Callorhinchus milii (elephant shark): 103188162
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Entry
103188162 CDS
T03088
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk02010
ABC transporters
cmk04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
103188162
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103188162
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cmk02000
]
103188162
Transporters [BR:
cmk02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
103188162
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_15
DUF7073
Motif
Other DBs
NCBI-GeneID:
103188162
NCBI-ProteinID:
XP_007906223
LinkDB
All DBs
Position
Unknown
AA seq
2134 aa
AA seq
DB search
MGLLVQLRLLLWKNVILRKRQKIRLIIEFLWPLFLFFILVWVRSTSLPINKGQCHYRNKA
LPSAGVLPWMQGIICNMNNPCLNYPTPGEAPGQVNNFDTSLLSAVLADLQDIDANPSDQE
QLNKFLKDLNPRINILDNLKEEQDIWENNQALTAFLKNNLSLSDAVIANMKLARKQMDKI
TKLRTPKVLNTMLNNRRIENASDSLEQLFGSLAILFCGNVNISGNGQSESSNEGTNSEKT
TSPSIKPAEMLPSDNSTSDFCKSVVETLQSTPSLNFLWNTIRHLLMGKIVFTPDTPVTRR
IVQEANSTFQAIGILKELGDSWEAWISSFLENSTAVNQFRKLLTNPVFAGTIDRHLSGTG
WNAKQLASFLYYKLPKSRQNSLPNFDQRDITDVIHMFTQFLGCINLDRFEAAPTEADLVN
ISFMLLEKKKFWAGIVFQGMDSEKDKVPPHVLYKIRMDIDDVENTEELEESPWYPGARDN
SYNEMPYILGGFAYIQDMIDHGIMKTQLNISQPLGVYVQQMPYPCYVDDGFTQNVGSILP
MFLILAFIFSVAMIIKGIVYEKEKCLKVMLNTMGLRNGVLWFAWFMDNIVILTISSAFLS
VLLKYGNILRYSDPLILFIFLFIYCVATIMECFLISTFFSRANLAAACGAILYFLLYLPY
VLCFAWQDYLTFPIKISISLLSTVAFSFGCENFSFYEVQGIGIQWSNINISAQEGNRFSF
LVSMLMMLLDAFIYWLLVLYIEAVFPGQYGIPKPWYFLVTKSYWCGSSSQNKEELTFQGK
QDEDNVFIEPQPHNLKLGISIQNLVKIYKTGKKIAVDGLSVNFYEGQITSFLGHNGAGKT
TTMSILTGLFPPSSGTAFIYGSDIRTAIDSIRKDIGFCPQYNVLFDQLTVEEHIYFYACL
KECSSKEVEEEIDRMINDVGLPNKRKDLVKNLSGGMQRKLSVAIAFVGGSKTVILDEPTA
GVDPYARRGIWELLLKYKPGRTIILSTHHMDEADILGDRIAIISHGKLCCCGSSMFLKKF
FGSGYYLTLVKSEAKRPAPRLEVAIPAGSEDDDVSDEGIGSDSGPNDLAGENAITGLIMK
HVPEAQFVESIGQEMTYILPYEGAGDGSFAELFKNLDLELQRFGISSYGISDTTLEEIFL
KVAEDTGVDTLMPGKNSFKKDWKRSSRELRQVTISNLDKNPGIMKANDDTDLETDASEGL
TGRGSYTIDGKKLMCRQFFALFIKRFHHARRSQRGFLAQVVLPALFVCLALVFSLIIPPF
VEFPSLELQPWMYGSAQHTFFSNDATENEQVAQVVDSMVNNPGFGTRCMNNDPIPKLPCM
SNDMAWYIPPVPPSVNDTLMNGNWSMANPSPSCQCSTPEKIIMLPDCIPGAGGLPPIERL
QNTTDILQNMTGRNVTDYLVKTYEEFYKIRYGGISVGEVNSQAEINKSIIAANLLQLSEM
FNVSQSDKKLLQNAEILMEKLVVKDNVKVWFYNKGWHAMVSFINVASNAILRGNLQPGKD
PRDYGITTYNHPLNLTKVQLTDATFSTTSADVVVSICVIFAMSFIPASFVLFLIQERVSK
AKHLQLVSGVNPTIYWIANFAWDMCNYAVSCVMVVVIFLCFQQKSYVSSANLPVLILLFV
LYGWSIIPLMYLASFLFSIPSTAYVVLTCINMFIGINGSIATFVLEIFENDNLTKINDVL
KQLLLIFPHFCLGRGLIDMAKNQGIADAYARFGEDRFQSPFEWNLVGKNLFAMFVQGMVL
FMFTILLEYTFFIRSRRDKVVPQSAVEEDEDVSRERMRILSGEAQSDLLTICELTKFYRR
KKKPAVNKICLGIPPAQCFGLLGINGAGKTTTFKMLTGDISVTSGDAFLNGYSILTQIGE
VHQNMGYCPQFDAINDLLNGREHLELYARLRGIPEEEVQKVAEWGIQKLGLIKYSSRSAG
TYSGGNKRKLSTAIALIGCPPVVFLDEPTTGMDPKARRFLWNCILSIVKEGRSIVLTSHS
MEECEALCNRMAIMVNGQFKCLGSIQHLKSRFGDGYTMSVRVGGDLLDLRSVEDFVQSSF
PNSVLKEKHHNILQYQLPSSENSLAKIFSTFTNNKERLNIEDYTVSQTTLDQVFVNFAKD
QIEIDEDAEMYTNSTAVTNEELKMEAVNFPHAKV
NT seq
6405 nt
NT seq
+upstream
nt +downstream
nt
atgggtcttctggtacagcttcgacttctactgtggaaaaatgtcatccttcgaaagaga
cagaagattcgcctgataattgaatttctttggccactgttccttttcttcattctggtt
tgggttcggtcaactagtctaccaataaataaaggacaatgtcattatcggaataaggca
ttgccttctgctggtgtattgccatggatgcagggtatcatctgcaacatgaacaatcct
tgtctcaattacccaaccccaggagaggcaccaggtcaagtaaacaactttgatacctca
ctgttgtccgccgtattggctgatttgcaggacatagatgcaaatccatctgatcaagaa
cagttaaacaaattcttgaaggatttgaatccaaggattaatattcttgataatctaaag
gaggaacaagatatttgggaaaacaaccaggcattgactgcatttctaaagaacaacttg
tcactttcggatgctgtaatcgcaaatatgaagttagcaagaaaacaaatggacaaaatc
accaaactacggactcccaaggttttgaacaccatgctcaacaacagaaggattgaaaat
gcaagtgattcacttgagcaattgtttggttctctggctatattattctgtggcaatgtg
aatatttcaggaaatggacaaagcgaaagctcaaatgaaggaacaaattctgaaaagacc
acatcaccaagtatcaaaccggctgagatgcttccttctgacaacagcacttctgatttt
tgcaaatctgtcgttgagacattgcagtctacaccatctctcaacttcctgtggaacact
atccgtcatctactgatgggaaagatagttttcactccagatactcctgtcactcgtcgc
attgttcaagaggcaaacagtacttttcaagcaataggaatcctgaaggaacttggagat
tcgtgggaagcatggatttcgtcgttcttggaaaacagcactgcagtgaatcaattccgg
aaattattaactaatcctgtgtttgctggaacaattgatcgacatctgtctggtactggt
tggaatgccaagcagctggcaagttttctctactacaaattaccaaagagtcgccagaat
agcctgccaaatttcgaccagagggatatcactgatgtcatccatatgttcacacagttc
ctcgggtgcatcaacttggataggtttgaagctgccccaactgaagcagatctggtcaac
atatcatttatgctcttagagaagaagaagttctgggctgggattgtattccaggggatg
gactctgagaaagataaggtaccacctcacgttctctacaagatcagaatggatatcgac
gacgttgaaaatacagaagaactggaagagagtccttggtatccaggagcacgagacaat
tcctacaacgaaatgccttacatcttaggcggttttgcatatattcaggacatgattgac
catggaattatgaaaacacaattaaatattagccaacctctcggagtctatgtgcaacag
atgccttatccttgttatgtggatgatggattcacacagaacgttgggagcatacttccc
atgttcctgatactggcttttatattttcggtcgccatgatcatcaaagggattgtatac
gaaaaagaaaagtgtctgaaggtgatgttgaatacaatgggtctgagaaatggtgtgctc
tggtttgcatggttcatggacaatatagtcatcttaactatatcatcagcgttcctctct
gtgcttctaaagtatgggaatatcctccgctatagtgatccactgatcctgttcatcttt
ctattcatatattgtgtggcaaccatcatggaatgctttctcatcagtacgttcttctca
agagccaacttagctgcagcctgtggagcgatcctctattttttgctgtacctaccatat
gtcctttgctttgcctggcaggactatctcacatttccaataaagatttccattagtcta
ttgtcaactgtggctttcagtttcggctgtgaaaatttttctttctacgaagtgcaagga
attgggatccagtggagcaatattaatattagtgctcaagaaggcaaccgattcagtttc
ctggtttccatgttaatgatgttgcttgatgctttcatttactggttgctcgttttgtac
attgaggctgtttttccaggtcaatatggtattccaaaaccttggtacttccttgttaca
aaatcgtactggtgtggatcatcgtctcaaaacaaagaggaacttactttccaggggaag
caagatgaagataatgttttcattgagccacaaccacacaacctgaaattaggcatatct
attcagaaccttgtgaaaatatacaaaactggcaaaaagattgcagtggatggtcttagt
gtaaacttctatgaaggacagattacatctttccttggacataatggagctggaaaaacg
accacaatgtctatattaacaggactgttccctccatcatctggaactgctttcatttat
ggcagtgacattagaacggcaatagattccatacgaaaggatataggattctgccctcag
tacaatgtgctctttgaccagctaactgttgaagagcacatttacttttatgcatgcttg
aaggaatgcagctcaaaggaggtagaagaggaaatagatcgaatgatcaatgatgttggg
ttgccaaataagcgtaaagacttggtgaaaaatctctcaggggggatgcaaagaaaattg
tctgtggccattgcatttgtgggaggatcaaaaacagtgattttggatgagccgactgca
ggtgtcgatccatacgccagaagaggaatatgggaattgcttctaaagtataagccaggt
cggacaattatactgtctacccaccacatggatgaagctgatattctgggagatcgcatt
gctatcatttcgcacggaaagctgtgctgctgtggatcatccatgtttttgaagaaattc
tttggaagtggctattacctcactcttgtcaagtctgaagcaaagagacctgcacctaga
ttggaagtcgcaatccccgcaggttcagaggatgatgatgtatccgatgagggcatcggc
agtgacagtggacctaatgaccttgcaggtgaaaatgctattacaggattgatcatgaag
catgtacccgaggctcagtttgttgagagtattggccaagagatgacatatattttgcca
tacgaaggggcaggtgatggaagttttgctgaactgtttaaaaatttagatttggagctc
cagagattcggtatctcaagctacgggatttcagatactacacttgaagagatttttttg
aaagtggcagaagatactggtgtggacacattaatgccaggaaagaattcatttaaaaag
gattggaaaagaagttcaagagaattgaggcaagtgaccatatcgaatcttgacaagaat
cctggaataatgaaggcgaatgatgacactgatctcgaaacagatgcttcagaaggatta
actggacgggggtcatatactattgacggcaaaaaactaatgtgcagacaattctttgct
ctcttcattaaaaggtttcaccatgcccgaaggagtcagagaggatttttggctcaggtt
gtgttgccggccctgtttgtctgcttagctctagtattctctctgattattcctcctttt
gtggagttcccaagtctggagctacagccatggatgtatggatcagcacagcacacattc
ttcagcaatgatgccactgaaaatgaacaagtcgcacaagtggttgactcaatggtgaac
aatcctggatttggaacacgatgcatgaacaatgatccaataccgaaacttccctgcatg
agcaatgatatggcctggtacatcccaccagtaccaccatctgtcaatgatacacttatg
aatggtaattggagtatggcaaatccctccccatcgtgtcaatgcagcactccagagaag
atcatcatgttgccggactgcatccctggtgctggagggctgccacctattgagcgactt
caaaacacaacagatatattacagaacatgacaggaagaaacgtaacagactatcttgtg
aaaacatatgaagaattctacaaaataaggtatggagggatttcagttggggaagtgaac
tcacaagctgagattaacaaaagcatcattgctgccaaccttctgcaactttcagagatg
tttaatgtgtctcagagtgacaaaaaacttcttcaaaatgctgaaattctgatggaaaaa
cttgttgtaaaggacaatgtaaaggtttggttttataacaaaggatggcacgcaatggtt
tcattcattaatgtggcaagcaatgcaattctccgtggcaatttacagcctggcaaagat
ccgagagattacggcatcactacctacaaccatcctttgaatctgacaaaggtgcagctg
actgacgcaactttttctaccacttctgcagatgttgtggtttccatctgtgttatattc
gcgatgtcgtttattcctgccagctttgtgctcttcctgatccaggagcgtgtctctaaa
gccaagcacctgcagcttgtcagtggtgtcaaccctacaatttattggattgccaatttt
gcctgggatatgtgcaactacgctgtttcgtgtgtcatggttgtggtcatcttcttatgt
tttcaacaaaaatcctacgtatcatctgccaacctcccagtgctgatccttctctttgtg
ctctatggatggtcaatcattcctttaatgtacctagcatctttcctattcagtataccc
agcacagcgtacgtggtgctgacctgcattaacatgttcatcggcattaatggcagtatc
gccacctttgtgcttgagatcttcgagaatgacaacttgactaagataaatgacgtcctg
aaacagcttctactaatttttccacacttctgtcttggaagaggtctcattgatatggca
aaaaatcagggtattgctgatgcatatgctagatttggtgaggaccggtttcaaagccca
tttgaatggaatctcgtgggcaagaatctttttgcaatgtttgttcagggcatggtgtta
ttcatgttcaccatacttttggagtacacgtttttcatcagatcaagacgtgacaaagtg
gttcctcagtctgccgttgaggaggatgaagatgtatctcgtgaacggatgagaattctg
agtggcgaggcacaaagtgacctgttaacaatatgtgaactaaccaagttttacagaagg
aagaaaaaacctgcagtcaataaaatctgtctggggatccccccagctcagtgctttggc
cttctgggaataaacggtgcgggcaaaacaacgaccttcaagatgctgactggagacatt
tctgtaaccagcggagatgccttcctaaatggatatagtattttgactcaaataggagag
gtacaccaaaatatgggctattgtcctcagtttgatgctatcaatgaccttttgaatgga
cgagagcacctggaattgtatgcccgtctgcgaggtatcccagaggaggaagttcaaaag
gtagccgaatggggaatccagaagttgggtctgattaaatactctagtaggtcagctgga
acctacagcggaggcaataagcgcaaattatcaacagcaatagctcttattggatgtcct
ccagttgtctttctggatgaacctaccacaggaatggatcccaaggctcgaaggttccta
tggaattgcatcctcagtattgtcaaagagggaagatcaattgttttaacatcacacagc
atggaagaatgtgaggccttatgcaaccgaatggctattatggtgaatggacaatttaag
tgccttgggagtattcagcacttgaaaagcaggtttggagacggttatacaatgagtgtt
cgagttggaggcgatcttttggatctgagatcagtggaggattttgtacagtcctccttc
cctaacagcgtactgaaggagaaacaccacaacatactacagtaccagcttccatctagt
gaaaactccttagcaaagattttcagcactttcaccaataacaaagagaggcttaacatc
gaggattatactgtttcacagacaactctagaccaggtatttgtcaattttgccaaggat
cagattgagatcgacgaagatgccgaaatgtacactaacagtactgcagtaaccaacgaa
gaattgaagatggaggcagtgaacttccctcacgctaaagtttaa
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integrated database retrieval system
