Callorhinchus milii (elephant shark): 103188633
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Entry
103188633 CDS
T03088
Symbol
rbm39a
Name
(RefSeq) RNA-binding protein 39a isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
cmk
Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmk03041
]
103188633 (rbm39a)
Spliceosome [BR:
cmk03041
]
Common components
Common spliceosomal components
General mRNP proteins
103188633 (rbm39a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
PRP38_assoc
RBD_DEAH11
RRM_7
Motif
Other DBs
NCBI-GeneID:
103188633
NCBI-ProteinID:
XP_007906870
UniProt:
A0A4W3GTG7
LinkDB
All DBs
Position
Unknown
AA seq
535 aa
AA seq
DB search
MADDLDIEAMLEAPYRKEDENKSSKANGQEERSKKKKKSRSRSHSRERKRSRSKERRRSK
ERERRRSRSKERKSREHRRSRSKDRRRIERGRYRSPFLEKRLISGPKFGGGGGNMGRGKM
GMQPGIKISRRRSRSRSPHKRDKSPIREPIDNISPEERDARTVFCMQLAARIRPRDLEEF
FSSVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQKLLGVPIIVQASQAEK
NRAAALANNLQKGTAGPMRLYVGSLHFNITEEMLRGIFEPFGRIENIQLMMDSETGRSKG
YGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERSDSSNASSFLDSDELERTGIDLG
TTGRLQLMARLAEGTGLQIPPAAQQALQMSGNISLGAMAAVTDLQARLIQQTEALNPPLA
MSTPPIATQCFQLSNMFNPQSEDDPAWDQEIRDDVIEECNKHGGVIHIFVDKNSPQGNVY
VKCPTIAAAVAAVGALHGRWFAGKMITAAYVPLPTYHNLFPDSLTTTQLLTPARR
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgacttagatattgaagcaatgctcgaggcaccttacagaaaggaggatgag
aacaaatcgagcaaagccaatggacaagaggagcgtagtaaaaaaaagaaaaagagccga
agtcggagtcacagccgtgaaaggaagagaagcagaagcaaagaacgcaggcgcagcaaa
gaacgtgaaaggaggaggagtaggagcaaagaaaggaaaagcagagagcaccgtcgcagt
cgaagcaaggatcggcgaaggatagagagaggccgctacaggagcccatttttggagaag
cgacttatctccgggccgaaatttggtggtggtggtggaaacatgggcagaggaaagatg
ggcatgcagcctggcattaaaatcagtcgtcggcgttccagaagcagaagcccacataaa
agggataagagcccaataagagagccaatcgataacatatcacctgaggaaagagatgcc
cgcacagtgttctgcatgcagcttgcagcacgcattcgaccgagagacttggaggagttt
ttctcttctgtgggaaaggttcgagatgtgagaatgatatcggataggaactctcggcgt
tcaaagggaatcgcttacgtggagtttgttgatgtgagctctgtcccacttgcaattggt
ctgactgggcagaaattacttggtgttccaattattgttcaagcttcacaggctgagaag
aatcgagctgcagcccttgctaacaaccttcagaaaggaactgcaggaccaatgaggcta
tacgtaggatctttgcacttcaatatcactgaagaaatgctgaggggaatttttgaaccc
tttgggagaattgaaaacatacagctaatgatggatagtgaaactggtcggtcaaaaggc
tatggattcataacgttttctgatgctgagtgcgcaaagaaggcgttggagcagctgaat
ggctttgagcttgccggtagaccaatgaaggtcggtcatgttacagaaaggtcagattca
tcaaacgctagctcattcctggatagtgatgagctggaaaggaccggtattgaccttgga
accacagggcgcctccaattgatggctcgacttgcagaaggcacaggcttgcagattccc
ccagcggctcagcaagcattgcagatgagcggcaacatatcattgggcgccatggccgct
gtaacagatttgcaagcccggcttatccagcagactgaagctttaaatcctcctttggct
atgtcaacaccaccaatagcaacacaatgtttccagctctccaacatgtttaacccacaa
tcggaagatgatccagcttgggaccaagaaatcagagatgatgtcattgaagaatgcaac
aaacatggaggagtaattcacatatttgtggacaaaaattcaccccagggaaatgtctac
gtgaagtgtcccactatagctgcggctgttgctgctgttggagccttgcatggaagatgg
tttgcaggaaaaatgatcactgctgcctacgtaccacttccaacctatcacaacctcttc
ccagattcactgacaaccacccagctactgaccccagcaagacgatag
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