Entry |
|
Symbol |
ndc1
|
Name |
(RefSeq) nucleoporin NDC1 isoform X1
|
KO |
|
Organism |
cmk Callorhinchus milii (elephant shark)
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:cmk00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103188832 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:cmk03019]
103188832 (ndc1)
Messenger RNA biogenesis [BR:cmk03019]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
103188832 (ndc1)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
Unknown
|
AA seq |
675 aa
MESAPGGRLVSKVLSWRAAAAIAWSVLLLPLSTFSFIFLSRISLLHPVQWATDSLQEMYN
SYTAFSLLVLAGIVVTIGTFNTEFYTVEPSIPCSRIALLGSVFHPQRLLHSVVHAALGVL
TAWCTTVLVGGRYHLMSAPSSQDSVGVEGLYLNEFHVFLLVGGAFFGYSYSLRYFINNMN
YLSFPAIQQFKYLRFKASLWLVVKYSAVQSFYFLRNYCLLYYFLGYVPRAWISASMSLQK
DSSVPALDTLSGLLDPPLLYVAWLSGTFLLLTWYLTWLLFKIFITEVYQFPVQLPFGEDA
DRCLPRVLTSKVSPLVKCLALQDLALLSQYSPCRRQEVFSLSQPGGHPHHWTAISSECLA
LLRDLTHTLTAYQEVAAGNGRVKAVPLTAEKRALGSSAEALGYNEAASYQPALRTSHLSH
TPRSSPLFKSSNSSVRSLLSFPFTPDLSSPFVSPMAPQQGEALDMASPCYGSLQSPHVMR
RGPKLWTSASRASGCIPTAEDYLVPVSCPTPETVRPSGLSHWLLHRQEQVKVFLSRRVPV
VYLFHKLPEASSQAVFANSQIHIWALEGLSHLTAASFTEDRYGVVQTTLASILSVLLSLQ
EAVDKHFKLPHACSRPARASGSLADSSYRTLRFALRSALKTSIYRITSTFGEHLGAVQVS
GEHRKRLQQFLTYKV |
NT seq |
2028 nt +upstreamnt +downstreamnt
atggagtcggcaccgggaggacggctggtcagcaaggtgctgagctggagggcagcggct
gccatcgcctggtctgtgctgctgctgcctctctccaccttctccttcatcttcctgagc
cgcatcagcctcctgcaccccgtccagtgggcaacagactcgctgcaagaaatgtacaat
tcgtacactgccttctccctgctggtgctggctggcatcgtggtgaccatcggcactttc
aacaccgagttttacactgttgagccttccatcccgtgcagtcggattgcgctgctgggg
agcgtgttccacccacagcggttactacattcggtggtgcacgcggcgctgggtgtgctg
actgcgtggtgcaccactgtgctcgtcggtggccgctaccacctcatgagtgccccttcc
tcacaggacagtgttggagtggagggcctgtacttgaacgagtttcacgttttcctgctg
gtggggggtgcgttcttcggctacagttacagtctccgatacttcatcaacaacatgaat
tacttgtcattcccagcaatccagcaattcaagtacctgcgtttcaaggccagcctgtgg
ctcgtggtgaagtacagcgctgtgcagtccttctacttccttcgcaactactgcctcctt
tactactttctaggttacgttcctcgagcctggataagcgcctcaatgtctctccagaaa
gacagttcggtaccagcgcttgacacactgagtggcctcttggaccctcctctcctgtac
gtggcctggctgagcggcaccttcctcctcctcacctggtacctcacctggctgctcttc
aagatcttcatcactgaggtttaccagttcccggtacagttgcctttcggtgaggacgcc
gatcgatgtcttcctcgagtcctgacgtccaaagtgtcaccacttgtgaagtgtctggct
ctgcaggacctggcattactgtcccagtattccccgtgccggaggcaggaggtcttcagc
ctgagccagccaggaggacaccctcaccactggacggccatctctagcgagtgcctggcg
ctgctccgggacctgacacacacactaacggcctatcaggaggtggcggccggcaatggc
agagtgaaggctgtaccactcaccgcagagaaacgggccctgggcagcagcgcagaggcc
ttgggctacaatgaggcagccagttaccagcctgcgctccgcacctcccacctttctcac
acgccccgcagctcgccgctgttcaagtcctccaactcctcagtgcggagcctgctcagc
ttccccttcacccccgacttgagcagccccttcgtctcgcctatggccccccagcagggc
gaggccctggacatggcctccccatgctacgggtcgttgcagagcccccacgtcatgagg
agggggcccaaactctggacatcagcttctcgagcctctgggtgcattcccaccgctgag
gactatctggttccagtcagctgcccgacccccgagacagtgcgccccagcggcctctcc
cactggctacttcaccgtcaggaacaggtgaaagttttcttgtcgcgccgagtgccggtg
gtgtatttgtttcataagcttccagaggcttcaagtcaggctgtgtttgccaacagccag
atacacatctgggcgctggaaggcctgtcccacctgacagcagcatccttcacagaggac
aggtatggagtggtgcagaccacactggcctccattctcagtgtcctgctctcccttcag
gaggctgtggacaaacacttcaagctgccgcacgcgtgcagtcggcctgcgagggccagc
gggagcctggccgactcctcctacaggacgctgcgcttcgccctgcgctccgccctcaag
acttccatctacaggatcaccagcaccttcggggagcacctcggggcggtccaggtctca
ggggagcacaggaagcgtctccagcagttcctgacctacaaggtgtga |