Callorhinchus milii (elephant shark): 103189947
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Entry
103189947 CDS
T03088
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk04510
Focal adhesion
cmk04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103189947
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103189947
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cmk00536
]
103189947
Glycosaminoglycan binding proteins [BR:
cmk00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103189947
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
103189947
NCBI-ProteinID:
XP_042200144
LinkDB
All DBs
Position
Unknown
AA seq
1488 aa
AA seq
DB search
MFRMETRTFALFAASQLLVLVAVTAQHTDTSDLVSCVQGGQLYNDKDVWKPEPCRICVCD
SGNILCDEILCEELKDCLNPEIPFGECCPVCPSERILTSGQGVQGQKGEPGDIKDVVGPR
GPPGPQGPLGEQGLRGSRGDKGERGATGPRGRDGEPGTPGNPGSAGPPGPPGPPGLGGNF
AAQMARGFDEKAGGAQLGVMQGPMGPMGPRGPPGPTGAPGPQGFQGSPGEPGESGAAGPM
GPRGPPGPSGKPGDDGDAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAR
GEAGAAGAKGEAGASGESGAPGPMGPRGLPGERGRPGAPGSAGARGNDGLPGPAGPPGPV
GPSGAPGFPGAPGSKGEAGPTGARGPEGAQGSRGESGSPGSPGPAGAPGNPGTDGIPGAK
GSTGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGLQGDPGATGFKGEAGPKGETGRIGPQ
GAPGPAGEEGKRGPRGEPGAAGPHGPPGERGPPGNRGFPGQDGLAGPKGAPGERGAPGIS
GPKGTTGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGASGAPGEDGRPGPPGPQGARGQP
GVMGFPGPKGATGQAGKAGEKGLLGAPGLRGLPGKDGETGAQGPPGPSGLAGERGEQGPP
GPPGFQGLPGPPGPPGEGGKPGDQGIPGEAGAAGLTGPRGERGFPGERGSPGPQGLQGPR
GLPGTPGADGPKGAGGSPGPNGAQGPPGLQGMPGERGTAGIPGAKGDRGDSGGKGPEGAP
GKDGARGLTGPIGPPGPAGPNGEKGETGPRGPTGAAGSRGAPGDRGETGPPGPAGFAGAP
GADGQPGAKGEPGATGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPAGATGFP
GAAGRVGPPGPNGNPGPVGPPGSPGKDGPKGLRGDPGTAGRTGDPGLQGPAGAPGEKGES
GEDGPPGPDGPSGPQGLSGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGAGDRGPP
GPVGPPGLTGPSGEPGREGNPGADGPPGRDGSTGMKGDRGATGPAGAPGAPGAPGSPGPV
GPTGKQGNRGESGAQGPMGPPGPAGARGMPGPQGPRGDKGEAGETGERGQKGHRGFTGLQ
GLPGPPGTAGDQGAVGAAGPSGPRGPPGPVGPSGKDGSNGLPGPIGPPGPRGRGGEAGPS
GPPGNSGPPGPPGPPGPGIDMSAFAGLSQPEKAPDPLRYFRGDQASPSLRPHDAEVDATL
KSLNNQIQNIRSPEGSKKNPARTCRDLKLCHADWKSGDYWIDPNQGCSLDAIKVFCNMES
GETCVYPNPSSIPRKNWWTSKGKDRKHVWFGETMNGGFHFSYGDDSLAPNTAAIQMTFLR
LLSTEASQNITYHCKNSIGYMDRATGNLKKALLLQGSNDIEIRAEGNSRFTYTVLEDGCT
KHTGKWGKTVIEYRSQKTTRLPIVDFAPLDIGGSDQEFGVDIGAVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgttcaggatggagacacggacattcgcgctgttcgcagcctcacaactcctcgtcctc
gtcgcggtcacagcgcaacacaccgacacctcggatttagtcagctgtgtgcaaggtgga
cagctgtataatgacaaagatgtgtggaagccagagccatgtagaatctgtgtgtgtgac
agtgggaatatcctctgcgacgaaatcctctgcgaggagcttaaagattgccttaacccc
gagatacccttcggagaatgctgtcctgtctgtcccagcgagcgaatcctgaccagcggg
caaggtgttcaggggcagaaaggtgaacccggggacattaaagatgttgttggaccacga
ggacctccaggcccacaggggccactgggagagcagggactaaggggatcacgtggcgac
aaaggcgaaagaggagcaactggccctcgtggtagagatggtgaacccggaactccaggc
aaccccggctcggccggccccccaggcccaccaggccccccaggccttggcggaaacttt
gctgctcagatggcacgaggatttgatgagaaagcaggaggtgcgcagttgggtgtgatg
caaggaccaatgggccccatgggacctcgaggacctccaggacccacaggagctcccggc
ccccaaggatttcaaggctcccctggagaacctggagaatctggtgctgctggaccaatg
ggacctcggggccctccggggccctctgggaagccaggtgatgatggtgatgctggcaaa
cctggcaaatcaggcgagcgcggacctcccggaccccagggggcccgaggattcccagga
accccaggacttccaggtgtcaaaggtcacaggggttaccccggtctggatggtgctcga
ggagaggctggggcagctggagcaaagggtgaagctggtgcgtctggggagagtggagct
ccgggtccaatgggtccccgggggttgcctggtgagagaggtcggcccggagccccaggc
tcagctggtgcacgtggtaatgatggtctgcctggcccagctggtcctcctggacccgtt
ggcccatctggtgctccaggcttcccaggagctccgggttcaaagggagaagctggtccc
acaggggctcgtggtccagaaggtgctcaaggatcgagaggcgagtcgggcagcccaggc
tcacctggtcctgctggtgcccctggtaaccctggcactgacgggattcctggggccaaa
ggctctactggcgcccctggcatcgctggagctcctggattccctggccctcggggtccc
ccaggcccacagggagcaacaggcccactcggcccgaaaggtctccagggtgatcctggc
gctacaggattcaagggagaagctgggccgaaaggagagactggacggattgggcctcag
ggagccccgggacctgctggcgaggagggtaagaggggacctcgcggagaacctggagca
gccggaccccacggcccccccggagagagagggccgcccggtaaccgtggattcccaggt
caggatggtttagctggtcctaagggagcccccggggagcgtggagcacctggtatcagc
ggccccaaaggtacaacaggtgaccctgggcgtcccggagagccaggcctgcctggtgcc
agaggtttgactggtcgccctggagatgccggacctcagggcaaagttggtgcgtctgga
gctccaggtgaggatggacgtcccgggccccccggcccccaaggagccagaggccaaccc
ggagtcatgggattcccaggaccaaagggcgcgacaggccaggctggcaaagctggtgag
aaaggtctccttggagctccaggactcagagggttaccgggtaaagacggtgagacagga
gcacagggaccaccaggaccatctggactggctggtgagagaggagaacaaggccccccg
ggcccccccgggttccagggcctgcccggaccccccggccccccaggtgaaggtggcaaa
cctggtgaccagggtatccccggtgaggccggagccgctggtctgactggtcctcgggga
gagcgcggcttcccaggtgaacgtggatctccggggcctcagggtctccaggggcctcgc
gggctcccagggacccctggtgctgacggcccgaagggagcaggtggatctccaggccct
aacggagcacagggtccccccgggctgcagggaatgccgggcgagcgaggcacagctggg
atcccaggagcgaagggcgaccggggcgactctggtgggaaaggacctgagggggcaccg
ggcaaagatggcgcaagaggtttgaccggccccattggaccccccggtcccgccggcccc
aatggtgagaagggtgaaacaggacctcggggcccgaccggcgctgctggttcccgcgga
gctcccggagatcgaggcgagaccggcccccctggccccgctggctttgctggagcccct
ggtgccgacgggcaaccgggagccaagggtgagccaggggccacgggacagaagggcgac
gctggggccccggggccacagggcccctcgggagctcccggaccacagggaccgactggt
gtgactgggcctaaaggagctcgcggagcccaaggacctgcgggagccactggtttccca
ggagccgcaggcagggtggggcccccgggccccaatggaaatccagggccagttggtcct
cccggttctcccggcaaggatggcccgaaaggcttgcgtggtgaccccgggaccgcggga
agaactggtgaccccgggctacagggcccggccggcgctcccggtgagaaaggagaatcc
ggtgaagatggtcctcctggtcctgatggtccttcaggtccccagggcttgtctgggcag
cgaggtattgtggggcttcctggtcagcgaggagagagaggcttccccggcctcccagga
ccctcgggtgaacccggcaaacaaggagcttctggtggtgccggagatcggggtcctcct
gggcctgtcggaccccctggcctcaccggcccctccggcgaacctggacgtgaggggaac
cctggtgctgacggacctccaggtcgtgatggatccactgggatgaagggcgatcgaggt
gcgacaggtccagctggtgcccccggtgcccctggtgctcccggctccccaggacctgtt
gggccaactggcaaacaagggaatagaggagaatctggagctcaaggtccaatgggtccc
cctggaccggcaggtgcccggggaatgcctggtcctcaaggtcctcgtggtgacaagggt
gaagctggcgagactggtgagagaggtcagaaaggtcatcgaggcttcactgggctgcag
ggcctgcccggacctcctggcacggctggtgaccaaggtgcagttggtgctgcaggtccg
agtggtcccagaggtcctcctggtccagttggcccgtctggtaaagatggctctaatggt
ctccctggtcctattggcccaccgggtcctcgaggtcgtggtggtgaagctggtccatct
gggccccctggtaactcaggtcctcccggacctcctgggcctcctggtccaggcatcgac
atgtcggccttcgctggcctctcccagcctgagaaagctcccgatcccttgcggtacttc
cgaggtgaccaggcgtctccatcccttcgccctcacgacgctgaggtcgatgccactctc
aaatccctgaacaaccagatccagaacatccgcagcccagagggcagcaagaagaaccca
gcccgtacctgccgcgacctgaagctttgccacgcagactggaagagcggtgattactgg
atcgatcctaaccagggctgcagtctggatgccattaaggttttctgtaacatggaaagt
ggcgagacctgtgtctatcccaacccctcaagtatcccacgtaagaactggtggaccagc
aagggcaaggacaggaaacatgtctggttcggtgagactatgaacggcggcttccatttc
agctatggtgacgacagccttgcccccaacactgctgccatccagatgactttcctgcgt
ctcctgtccactgaagcctcccaaaacatcacctaccactgcaagaacagcatcggctac
atggacagagccaccggcaacctgaagaaagccctcttgttgcaaggctccaatgacatt
gaaatcagagcagaaggaaacagcaggttcacgtacacggttttggaagatggttgcacg
aaacacactggcaagtgggggaagacagtcattgaatacaggtcacagaaaacaactcgt
ctgcccattgtagatttcgcaccgttggatattggtggttcagatcaggaatttggtgtt
gacattggcgcagtctgcttcttgtaa
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