Callorhinchus milii (elephant shark): 103190054
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Entry
103190054 CDS
T03088
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk04140
Autophagy - animal
cmk04148
Efferocytosis
cmk05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
103190054 (vps39)
04148 Efferocytosis
103190054 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
103190054 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cmk04131
]
103190054 (vps39)
Membrane trafficking [BR:
cmk04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
103190054 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Beta-prop_RIG_2nd
WD40_like
Motif
Other DBs
NCBI-GeneID:
103190054
NCBI-ProteinID:
XP_042194190
LinkDB
All DBs
Position
Unknown
AA seq
883 aa
AA seq
DB search
MHDAFEPLPILEKLPLQIDCLAAWDDWLLVGTKPGHLLLYRIKKEPGSNRFEVLLEKSHK
NFSKKIQQLCVVPQYKILVSLLENNIYVHDLLTFQQITMVTKAKGSSLFSCNVQSAGGED
AQLRMCVAVKKKLQLYYWKDREFHDVQADFSVPDVPKSMAWCESSICVGFKRDYYLIRLD
GKGSIKELFPTGKQLEPLVTSLGEGKVAVGQDDLTVVLSEMGVLTKCALNWTDIPIAMEH
QAPYIIAVLPRYVEIRTIDPRLLVQSVELQRPRFITSGGMNIVYVASNHFVWRLVPVSIA
AQIRQLLPDKQFELALQLARMKDDTDSDKWQQIHHIQNLFAFNLFCQKRFDDSMQVFTKL
GTGQSVPPPIDPTHVIGLYPDLLPADYRKQLQYPNPLPTLSTAELEKAHLALIDYLTQKR
AHLVKQLHDSEPSSTSPLVEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENN
HCHIEESEHILKKAHKYSELIILYEKKGLHEKALLVLLDQATKANSPLKGHERTIQYLQQ
LGKESLSVIFEFSLWVLKACPEDGLKIFTEDLIEVENLPRDKVLEFLRDNCKELAIPYLE
HIIHQWDETGPCFHNWLIQLLRERVQTLMREYLCSLPQGQSAVSAGDEEGELGEYRNKLL
SFLEISTHYQPSRLITDFPFDGLLEERALLLGRMGLHEQALFIYVHILHNTRLAEDYCHK
HYDVNDDTNRDVYLSLLRMYLSPPEPQCVGPVRVEVAEPQPNLPAALSVLALQYSKLDTS
KTLNLLPANTHIQEIRLFLENVLEANAQRRRYNQILKSLLQAEFLRIQEERIYHQEVKCI
ITEEKICRVCKKKIGNSAFARYPNAVVVHYFCCKDRTACPAET
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcctttgagccgctgcccatcctggagaagctgccgcttcagatcgactgt
ctggcggcctgggatgattggcttctcgttggcacgaaacccggccacctcctgctctac
aggatcaagaaggagccagggtccaacagatttgaagttttactggagaaatcccacaaa
aacttctcgaagaaaattcaacagctgtgtgtggtgccacagtataaaatcctggtttct
ctcctggaaaataatatttatgtccatgacttgctcaccttccaacaaatcaccatggtt
accaaggccaagggcagcagcctcttctcctgtaacgtgcagagcgctggcggcgaggac
gcccagctgaggatgtgtgtggctgtgaagaagaagctacagctttattactggaaagat
cgggagtttcatgatgttcaggctgatttcagtgttcccgatgtgcccaagtctatggct
tggtgtgagagctctatctgtgttggcttcaagagagattattacttgatccggctggat
ggcaaaggttccattaaggagttgttcccgacggggaagcagctggagccgctggtgacg
tcgctgggggaagggaaggttgcagtgggacaggatgacttgaccgtggtgctgagcgaa
atgggcgtcctcaccaagtgtgccctcaactggactgacatccccatcgccatggagcac
caggcaccatacatcattgctgtgctgccgcgctatgtggagattcgcaccatcgatccc
cgactcctggtccagagtgtagagcttcagagaccccgcttcatcacgtcgggggggatg
aatattgtgtacgtggccagtaatcactttgtgtggcgcctggttccggtctccatcgcc
gctcagatccgacagctgctcccagacaagcagtttgaactggcactgcaactggcgaga
atgaaggatgacacagacagtgacaaatggcagcagattcaccacatccagaacctcttc
gccttcaacctcttctgtcagaaacgctttgacgattccatgcaggtcttcaccaaactg
ggcacaggtcagtcagtgccacctcccatagaccccacgcacgtaatcgggctgtaccca
gacctgctgcctgcggactacaggaaacagctgcaataccccaaccctctgcccacgctc
tccactgccgagctggagaaagctcacctcgcgctgatagactaccttacccagaaacgt
gcccacctggtgaagcagctgcacgactcggagccctccagcacctcgcccctggtggag
gggacgcccaccatcaagtccaaaaaaaaactgctgcagattatcgacaccaccttactc
aagtgttaccttcacacgaatgtggcgttggtggccccgctgttgcggttggagaacaat
cactgtcacatcgaggagagcgagcacatactgaagaaagctcacaagtacagcgagctc
atcatcctgtacgagaagaaggggctgcatgagaaagcattgctggtgttactggatcag
gccaccaaagccaactcccccctgaaaggacacgagcggaccatccagtacctacagcag
ctggggaaggagagcctgagtgtgatatttgagttctcgctctgggtgctgaaggcctgc
cctgaggatgggctgaagatcttcactgaggacctgattgaggtggagaatctgcctcga
gacaaggtgctggaattcctgagggacaactgtaaggagctggccattccttacctggaa
cacatcatccaccagtgggacgagacaggcccgtgcttccacaactggctgatccagctg
ctccgcgagagagtgcagacgctcatgagggaatatctgtgttcactgccacaggggcag
agtgctgtgagtgcaggagatgaggaaggtgagctcggcgagtacaggaacaaactgctc
agcttcctggagatctccacacattaccagcccagcaggctcatcacggacttccccttc
gatgggttgctggaggagcgagcgctgttactcggccgcatggggctgcacgagcaggcg
ctcttcatctatgtccacatcctccacaacacccgcctggccgaggattactgccacaag
cactacgacgtgaacgacgatacaaaccgtgacgtatacctgtcgctattgaggatgtac
ctgtctccccccgagccgcagtgtgtaggccctgtgcgggtggaggtggccgagcctcag
cccaacctaccagcagccctgagcgtactggctcttcaatacagcaagctggacaccagc
aagacgttaaaccttctccccgccaacactcatatccaggaaattcgtctgttcctggag
aatgttctggaagccaacgctcagcggcgcagatataaccagatcctcaagagtctgctg
caagccgagtttctccggatccaggaggagaggatttaccatcaggaggtgaaatgcatc
atcaccgaggagaaaatatgtcgggtctgtaaaaagaagatcggaaacagtgcgtttgct
cgttaccccaacgctgtggtcgttcactatttctgctgcaaggaccggactgcatgtcct
gccgagacgtga
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