Callorhinchus milii (elephant shark): 103190273
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Entry
103190273 CDS
T03088
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
103190273 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmk03021
]
103190273 (supt5h)
03019 Messenger RNA biogenesis [BR:
cmk03019
]
103190273 (supt5h)
Transcription machinery [BR:
cmk03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
103190273 (supt5h)
RNA polymerase I system
103190273 (supt5h)
Messenger RNA biogenesis [BR:
cmk03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
103190273 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
Spt5-NGN
KOW7_SPT5
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
103190273
NCBI-ProteinID:
XP_007909184
UniProt:
V9K869
LinkDB
All DBs
Position
Unknown
AA seq
1103 aa
AA seq
DB search
MSDSEGSNFSDDESSRSSEAEEQEENEEEEERVSGGSEKVDVEDEAEEVEEEEEEEEEEE
EYDEEEDDRPRKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEELEASNIDNLVLD
EDHSGARRLLNHWRDKREEELGEYYMNKYAKPTGGDHHYGQSDELSDDITQQQLLPGVKD
PNLWTVKCKIGEERGTAIALMRKFIAYQYTDTPLQIKSVVSPEHVKGYIYIEAYKQTHVK
QAIEGVGNLRIGYWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYV
EPSQNTISLKLIPRIDYERIKARMSLKDWFAKRKRFKRPLQRLFDAEKIRSLGGDVTSDG
DFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLELVTETTGKER
EHNLQPGDNVEVCEGELINLQGKILSVEGNKITILPKHEDLKDPLEFPAHELRKYFKMGD
HVKVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEW
GELVQLDPQTMGVIVRLERETFQVLNMYGKVITVRHQAITRKKDNRFAVALDSEQNNIHV
KDIVKVIDGPHSGREGEIRHLYRGFAFLHCKKLVENGGMFVCKTRHLVLAGGAKPRDVTN
FTVSGFAPMSPRISSPMHSSGGAPRGGFGGQGGMGRGRGRRDNDLIGQTVRISQGPYKGY
IGVVKDATESTARVELHSTCQTISVDRQRLTTVDSKKKGGLTSAYSRTPMYGSQTPMYGS
GSRTPMYGSQTPLHDGSRTPHYGSQTPIHDGSRTPGQSGAWDPNNPNTPSRNDDEYDFPY
DDEPSPSPQAYGGTPNPQTPGYTDVPSPQVNPPFNPQTPGTPAMYNTDQFSPYAAPSPQG
SYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
GAYNPHTPGSNIDQGSNDWVTTDIQVKVRDTYLDAQVIGQIGMIRSVSGGLCSVYLSDTD
KVVSISSEHLEPVTPVKNDKVKVILGEDREATGMLLSIDGEDGIVRMELDDQLKILNLRF
LGILSEEGTFNATSSGKDGYSRK
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagtgaaggcagcaacttctctgatgacgaaagctcgcggagcagtgaagca
gaggagcaagaggaaaacgaggaggaagaagagcgtgtcagcggtgggagtgagaaggtc
gacgtagaggatgaggctgaagaagttgaggaagaggaagaagaggaggaagaggaagaa
gagtacgatgaggaagaagacgaccgacccaggaagaagccacgccatggaggattcatc
ttggatgaagctgatgtggatgatgagtatgaagatgaagatcagtgggaggatggagcg
gaagacattcttgagaaagaagaacttgaagcttccaacattgacaacctggtgctcgat
gaagatcactcaggagcaagaaggctcctgaatcattggagagataagagggaggaagaa
cttggggaatattacatgaataagtatgccaagccaactggcggagatcatcactacggc
cagtctgatgagctttctgatgacatcacccagcagcagttactcccaggtgttaaggat
cccaacttgtggacagtaaagtgtaagattggtgaggagcgaggtactgcaattgcactg
atgcggaaattcattgcctatcaatacacagacacacccctccagatcaagtcagttgtg
tcccccgagcacgtgaaggggtacatttacatcgaggcgtataagcagacccacgtcaag
caagccatcgagggcgtggggaacctgaggataggctactggaatcagcagatggttccc
atcaaggaaatgactgacgtgctgaaggtggtgaaagaagtgaccaatctcaaacccaaa
tcctgggttcgcctaaagagaggcctctacaaggatgatattgcgcaggtcgactatgtt
gagccaagccaaaacaccatctctctgaaactgatcccgagaatcgattatgagcgcatc
aaggctcgaatgagtttgaaagactggtttgccaaaaggaagaggttcaagaggccactt
caacgcttgtttgacgcggaaaaaatcaggtcactggggggtgatgtcaccagcgatggc
gacttcctcattttcgaaggcaatcgctacagccgaaaaggattccttttcaaaagcttt
gccatgtcagcagttatcaccgaaggagtcaaaccaaccctttctgaactggaaaagttt
gaggatcaaccagagggcattgatctggagttggtgacagaaaccacaggcaaagaaaga
gaacacaacctgcagcctggcgacaacgtggaagtgtgtgagggcgagttgatcaacctg
caggggaaaatcctgagtgtggaagggaacaagatcactatccttcccaaacacgaggat
ctgaaggatcctttggagtttccagcccatgaattgcgtaaatactttaagatgggagac
cacgtgaaagtgatcgcgggtcgttacgagggagacacgggactgattgtgcgagtggag
gagaatttcgtcattctgttttcggacctgaccatgcacgagctgaaagtgcttccgagg
gacttgcagctgtgttctgagacagcgtccggggtagatgctggcggtcagcacgagtgg
ggagagctggtgcaactcgatcctcaaaccatgggagttattgtccggttggagcgagag
actttccaggttctcaacatgtacggcaaggtgattacagtcaggcaccaggcaataact
aggaagaaggacaaccgctttgctgtggctctggactccgagcagaacaatattcacgtc
aaggacattgtcaaagtgatcgatggaccgcactcgggtcgcgagggtgagattagacac
ttgtaccgtggctttgcttttctgcactgcaagaagctggtggagaacgggggcatgttc
gtttgcaaaacacggcatttggtcctagctggaggagcaaagccaagagacgtgacaaat
ttcacagtgagtggatttgctcccatgagccctcggatcagcagccccatgcactccagc
ggtggagcccctcgaggtggatttggaggacaagggggaatgggccgtgggcgaggccgc
agggataacgatttgattggccagacagtccggatttcacaaggaccttacaaagggtac
atcggcgttgtgaaagacgccacagaatccactgcgcgagttgagctccactccacgtgt
cagaccatttctgtggatcgccagcgactcactacagtggactccaagaagaagggtggc
ttaacatccgcttacagtcgcaccccaatgtatggctcccagactcccatgtacggttct
ggatcccggacaccaatgtacggctctcagacaccgttgcatgatgggagtcgaactcca
cattacggctcccagactccaattcacgatggaagcaggacaccgggacagagcggtgcg
tgggatcccaataatcccaacacgccctccaggaacgacgatgaatatgacttcccgtac
gacgacgagccctcgccatctccgcaggcctacgggggaacccccaacccgcagacgcca
ggctacacagacgtgccctcgccccaagttaacccaccgttcaaccctcaaacccccgga
accccggcaatgtacaacacagaccagttctctccctatgcagctccatcgcctcaaggg
tcctaccagcccagccccagcccgcagagctatcaccaggtggctcccagccccgtgggc
tatcagaatactcactcacccgccagctaccacccaacaccttcacccatggcataccag
gcgagtccaagtccgagccctgtaggatacagcccaatgacccctggagctccatctcct
ggggcttacaacccacacacgccgggctccaacatcgatcagggctccaacgactgggtc
accaccgatatccaggttaaagtgcgtgatacctacctggacgcacaggtcatcggtcag
atcggaatgatccgcagtgtgtcgggtggtttgtgttcggtatatctgtcggacactgat
aaagtggtcagtatctccagtgagcatctggaacctgtcacgcctgtgaaaaacgataag
gtgaaagtgattctgggcgaagaccgggaagccacgggaatgctcctcagtatcgacggc
gaggacgggatcgtccggatggaactcgatgaccagctgaagatcctcaacctgcgcttc
ctcggaatcctcagcgaggagggaaccttcaacgccacgtcatcggggaaggacggatat
agtcggaagtaa
DBGET
integrated database retrieval system
