Callorhinchus milii (elephant shark): 103190526
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Entry
103190526 CDS
T03088
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cmk
Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cmk03036
]
103190526 (dicer1)
Chromosome and associated proteins [BR:
cmk03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
103190526 (dicer1)
microRNA pathway
RISC loading complex
103190526 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
DEAD
ResIII
Cas3-like_C_2
SLFN-g3_helicase
dsrm
DSRM_2
Motif
Other DBs
NCBI-GeneID:
103190526
NCBI-ProteinID:
XP_007909546
LinkDB
All DBs
Position
Unknown
AA seq
1923 aa
AA seq
DB search
MAGLQLMTPASSPMGPFFGLPWQQEAIHDNIFTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLTKELSHQIRGQFNKNGSRTVFLVNSTPSVAPLAAAVKTHSDLKVGEYSSIEDV
QSWTREEWHKCFIGQQVLVMTCHVFLHILRKGFLFLSKINLLVFDECHLAIKDHPYQEIM
KMCEENPSCPRILGLTASILNGKCDPSELEEKILKLEKILRSSAETATDLVVLDKYSSQP
HEVVLDCGPYVDKSGLYEKLLMELDEALNFINDVNNIPAHCDDRGPTLIPKQVLVDCRAV
LTVLGPWCADKVAGMMVRELQKYIKHEQEELNRKFLLFTDTLLRKIHALCEEHFSPAMLD
LKYVTPKVNKLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEIEEKEK
TDTNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELSYISSNFITGHGIGKNQP
RNKQMEVEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQS
KGRARAPISNYIMLSDSDKIEDFKEDLKTYKAIEKILRNKCSKSVDSADVEVEPVAADDD
VLPPYVLRPEDGSPRVTINTAIGHVNRYCARLPSDPFTHLAPKCKTQELSSGTFQSTLYL
PINSPLRIPVTGPPMPCTRLAEKAAALLCCERLHKIGELDDHLMPVGKETVKYEEELDLH
DEEETSIPGRPGSTKRRQCYPKAIPECLRNSYPKPNQPCYLYVIGMVLTTPLPDELNFRR
RKLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELRKLNFTLGAKQLELITRL
HQYIFSHILRLEKPALEFKPTEADAAYCVLPLDIVHGSNHLDIDFTFMEDIERSEARTGI
PNTQYTKEKPFTFNLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFA
EYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQN
KQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTAKEAGVGIEALPSNF
RYPNLDFGWKKSIDSKAYIMTTGPCTEENESYNKHSTTVAPEDAAHQGAINENSSLENIC
QTSVNSKPSLKNPSPKKLCDADKVTRTTVINGVCSETQTQFINEDCVCQRNQRNSYRHDV
LVQPTTSVPAQNTHNSENQLKPRVECNLQSNNLDRITNKSTSDGCSKEAISSNSSQPLAI
PQWILDPGDCPSGVYTTETLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTY
LFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQD
KCIADKSELKDVIGAEQLANGAPYEDEEDEDDDEVEEEDPEFREDLMWRAHKEETEYEDD
FSEYDQEHIKFIDNMLMGSGAFGKKISLPAFPPTEGSYEWKAPKKSTSGSGHVSLEGDEF
DYSSWDAMCYLDPSKATDEDDFVVGFWNPSEENGGVDAGKQSISYDLHTEQCIADKSIAD
CVEALLGCYLTSCGERAAQLFLCSLGLKVLPVEEKIGSLVKAGATKEQSVLRLKEKAESG
TADDILLPSLKPLPCKDLEYGHLQIPPRCMFDHPDAERTLSHLISGYENFEKKINYKFKN
KAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSAL
VNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKE
EDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLE
MEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQI
QPS
NT seq
5772 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcttacagctcatgacacctgcttcatcaccaatgggtcccttttttggactg
ccatggcaacaagaagctatccatgataacatttttacaccaaggaaatatcaggttgaa
cttcttgaagcagctttggaacacaataccatagtttgtttaaatactggctcagggaag
actttcattgcagtgctacttacaaaggagctgtctcatcagatcaggggacaattcaac
aagaatggatctcggactgtgttcttggttaactctacaccttctgtggctccactagca
gcagctgtgaagacccattcagatctgaaggtgggggagtattccagcattgaggacgtt
cagtcatggacaagagaagaatggcacaaatgcttcattggacaacaggtgctagtaatg
acttgccatgtcttcttgcacatcttgagaaagggtttccttttcctgtccaaaatcaac
ctgctggtttttgatgaatgccatcttgcaattaaagatcatccctatcaggagattatg
aagatgtgtgaggagaacccatcatgccctcgaatcctgggacttactgcctcgatatta
aatggtaaatgtgacccttctgaattggaggagaagattctgaagctggaaaagattctc
cgaagcagtgcagaaactgccactgacttggtggtgttggacaaatattcgtctcagcct
catgaagtcgtgttagactgtggaccatacgtggataagagtggcctatatgaaaaactt
ttaatggaattggacgaagcacttaattttatcaatgacgtcaataacatacctgcacac
tgtgatgatcgaggtccaactttaattcctaagcaggtgttggtagactgccgtgcagta
ttgactgttctaggaccttggtgtgcagataaagtagctgggatgatggtccgagaactg
cagaaatacatcaaacatgagcaggaggagttgaacaggaagttccttttgtttacagac
actcttctgagaaaaatccatgcactgtgtgaagagcacttctcgcctgccatgcttgat
ctgaaatacgtcacccccaaagtcaacaagctgcttgaaatcctccacgagtacaaacct
tttgaacggcagcaatttgaaagcgttgagtggtacaacaaccgaaaccaggacaattat
gtctcgtggagcgattctgaggatgaggacgaggatgaagagattgaggaaaaggagaaa
actgacacgaacttcccatccccattcaccaatatattgtgtggaattatttttgttgag
agacgctatacagcagttgtcttaaacaggctaataaaggaagctggcaagcaggatcca
gagttgtcttatattagcagcaatttcataaccggtcatggtatcggaaagaaccaacct
cggaacaaacaaatggaagtggagttcaggaagcaggaagaggtgctgagaaagttccgt
gctcacgagaccaatttacttattgccactagtgttgttgaggaaggagtagatattcca
aaatgcaacctggtggttcggtttgatttgcctacagaatatcgctcttacgtgcaatcc
aaaggccgagctagagcacccatctcgaattatatcatgctttcggattctgataaaatc
gaagacttcaaggaggatcttaaaacttacaaagcaattgagaagattctccgaaataag
tgttcaaagtctgtggattctgctgacgtggaggtagagcctgttgctgctgacgatgat
gtgcttccaccatatgtattgcggccagaagacggaagcccccgagtaacgatcaacact
gccattggacatgttaatagatactgtgcacggttgccaagtgatccattcacacacttg
gctccgaaatgcaagactcaagaactgtcaagcggtacttttcaatcaactctctacctt
cccatcaattcaccccttcgcatcccagtaactggtcctccgatgccctgtacaagatta
gctgagaaagcagcagcccttctctgttgtgaaagactgcacaaaataggtgagctggat
gatcatttgatgccagtggggaaagaaaccgtgaaatatgaagaggagcttgatttgcac
gatgaagaagaaaccagtattcctgggagaccaggctctacaaaacgcagacagtgctat
cctaaagcgattcctgaatgtctgaggaacagttaccccaaacctaaccagccttgttac
ctgtacgtgattggcatggtgttaaccactcctcttccagacgaactcaatttcagaagg
agaaagctatatccccccgaagatacaacgcgatgttttggaatactgactgccaaaccg
atacctcggattcctcactttccagtgtacacccgttctggggaggttaccatatctatt
gaattgcgcaaattgaatttcacattgggtgcgaagcagctggagctgatcactaggcta
caccagtatatcttctctcacattcttcgcctggagaaacctgcactagaattcaagcct
acagaagctgatgcagcctactgtgttctacctctcgatatagttcatggttcaaaccac
ttggacatcgacttcacctttatggaagatatagaaagatcggaggcacgcacaggcatt
cccaatacacagtacacaaaggaaaagcctttcacatttaatttggaagattaccaggat
gcagtgatcattccaagatatcgaaactttgaccagcctcatcgtttctacgtggcagat
gtgtacaccgatctcacgcctctcagtaaattcccctcccctgaatatgaaacatttgca
gagtattacaaaaccaagtacaaccttgatctgaccaacttgaaccagcctttgctggat
gtggaccacacatcttcgagactgaatcttctaacaccacgacacttgaatcaaaaggga
aaggcactgcctctaagtagtgcggagaagcgcaaggctaaatgggagagtttgcaaaac
aaacagattctggtcccagaactctgtgctattcatccgatcccagcttccctgtggcgc
aaggcagtgtgccttcccagtattctctatcgtctacactgtctattaacagccgaggag
ctacgagcccaaacagccaaggaagccggtgtgggaatcgaagctctcccttcaaacttc
aggtatcccaatctagactttgggtggaaaaagtctatcgacagcaaagcttatatcatg
acaactggcccctgtacagaagagaatgagagttacaataagcacagcacaacagtagcc
cctgaagatgctgcacatcaaggtgctataaacgagaactcctccttagaaaatatttgc
cagacatctgtgaacagcaaaccatcgctcaagaacccgtcacccaaaaagctctgcgat
gctgacaaagtcaccaggaccacagtgatcaatggcgtctgttccgagacccaaacccag
ttcataaacgaagattgtgtttgtcagcggaatcaaaggaactcctacaggcacgatgta
cttgtacagccaactacctcagttccagcgcaaaatacacacaacagtgagaaccagctc
aagccccgagttgaatgtaatctacaaagtaataaccttgatagaattactaacaaatct
acctcagatggttgctcaaaagaggcaatttcctccaattcctcacagcctctggcaatt
ccacagtggatcttggatccgggtgattgcccttctggtgtgtatacaactgaaaccctc
ggccctaaccctggtctgattctgcaagctttgaccttgtcaaatgccagtgacggcttc
aacctggagcgtcttgagatgcttggtgattcgttcttgaagcatgctataacaacatat
ctcttttgtacataccctgatgcccatgaaggtcggctgtcctacatgaggagcaagaag
gtaagcaactgtaatctttatcgtcttggcaaaaagaaaggactccccagtcgaatggtg
gtgtcaatatttgatccacctgtgaattggctccctcctggctatgtggtgaatcaggac
aagtgcattgccgacaagagtgagctgaaagatgtgattggagcagaacaactggccaat
ggggcgccctatgaggatgaagaggacgaagatgacgacgaggtagaggaggaggaccct
gaattccgtgaagatttgatgtggagagcacacaaggaagaaaccgagtatgaagacgac
ttttccgagtacgatcaggagcacatcaaattcatcgataacatgctcatggggtctggt
gccttcgggaagaagatttctctgccagccttcccacccaccgagggaagctacgagtgg
aaggctcccaagaaatccacatcggggagcgggcatgtctcgttggagggcgatgagttt
gactacagctcctgggatgccatgtgctacctggatcccagcaaggccacagatgaagac
gattttgtggtgggattctggaatccatcggaggagaatggcggggtggacgcgggcaaa
cagtcgatctcttacgacctgcacactgagcagtgcattgccgacaagagcatcgccgac
tgtgtggaggctctgctgggctgttacttaaccagttgtggagagagagcagcccaactc
ttcctctgctctctggggctgaaagtcctcccggtggaagaaaagataggttccctggtg
aaagcaggagcgactaaggagcagagcgtccttcgtctgaaggaaaaggctgagagtgga
acggctgatgatatcttgttgcccagtctgaaaccgcttccttgtaaagaccttgaatat
ggccacctgcagattcctcccagatgcatgtttgatcacccagatgccgagaggacattg
agccacctaatatctggctatgaaaactttgagaagaagataaactataagtttaagaac
aaggcctaccttttacaggcatttacccatgcctcctaccactacaacacaattacagat
tgttaccagcggctggaattccttggagatgcaattctggactacctcataaccaagcac
ctttacgaagatccacggcagcattctcccggcgtgctgactgacctgcgctcggcactg
gtcaacaataccatctttgcttctttagctgtgaagtacgattatcacaaatactttaaa
gccatctcgcccgagttgttccatgttatagacgactttgttcagttccaactggagaag
aacgagatgcaaggaatggattctgagctgaggagatcagaggaggatgaggaaaaagag
gaagatatagaggttcccaaagccatgggggatattttcgagtctcttgctggggccatc
tatatggacagtgggatgtccttggaaactgtttggcaagtttactaccccatgatgaga
ccactcatagagaaattctcagccaatgtcccgcgttctcctgttcgggagttgctggag
atggaaccagagacggccaagttcagccccgcggagaggacgtacgatggcaaggtgcgt
gtgacggtggaggtggttggcaaagggaagttcaaaggagtcggcaggagttaccggatc
gccaaatccgcggcagctcgcagagcgctgcgtagcctgaaggcaaaccaacctcagata
caacccagctga
DBGET
integrated database retrieval system
