Callorhinchus milii (elephant shark): 103190727
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Entry
103190727 CDS
T03088
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit beta-1
KO
K05636
laminin, beta 1
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk04510
Focal adhesion
cmk04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103190727
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103190727
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
ATG17_like
BNR_6
Motif
Other DBs
NCBI-GeneID:
103190727
NCBI-ProteinID:
XP_042191374
LinkDB
All DBs
Position
Unknown
AA seq
1789 aa
AA seq
DB search
MSRGSSAAAEPHAAVWLCAFAQGPEFSYGCAEGSCYPATGDLLIGRADKLAATSTCGLHK
PEPFCIVSHLQEEKKCFLCDSRTPFTENPNSHRIENVVTTFAHNRLTTWWQSENGLENVS
IQLDLEAEFHFTHLIMTFKTFRPAAMVIERSSDFGKTWQVYRYYAYDCESSFPGILTGPL
TKVDDVICDSRYSDIEPSTEGEVIYRVLDPAFKIEDPYSQRIQNMLKITNLRIKYTKLHT
LGDNLLDSRIEIKEKYYYAIYDMVVRGNCFCYGHASECAPVHDSDDDYDEDVEVEGMVHG
RCVCRHNTKGLNCELCQDFHHDLSWRPAEGRNSNTCQKCNCNGHSEKCHFDMAVYLASGN
VSGGVCDDCQNNTMGHHCEQCKPFYYQHPERSIRAHDICEPCNCDPDGSLQGGACDRYTD
LSTGLIAGQCRCKANVEGERCNLCKESYYGLSEDNPVGCSSCTCNHLGTHPGGNPCDDQK
GNCYCKRLVKGRNCDQCLPQHWGLSNDLDGCRPCDCDQGGSYNNDCSAETGQCKCKHHMV
GRRCNEVESGFYFIALDHYTYEAEEGNFGPGTTIVQRKYPDDRSPTWTGIGFVRVPEGAY
VEFYIDNLPYSMEYDIVIRYEPQLPKNWEEAKITVFRPSKIHTSSRCGNTIPDDDNQLVS
LPSGSRYVVLPQAVCFEKGLNYTIRLELPQYSANDEIETPYTLIDSLVLMPHCKSLQIFS
AGETSDGLTNRIWETFQRYRCLENSRSITKAHMTDVCRNIISSISSIIHDGALSCQCDPQ
GSLSLVCDPSGGQCQCRSNVVGRNCDRCIPATYSFGPNGCRPCDCQPEGSVHGFCHHTTG
QCQCNEGVYGRQCDQCQPGYWGFPNCHPCQCNGHVDHCDLETGECLGCRGHTTGHSCERC
LSGYYGDPVLGSGDHCHPCPCPDDPESGRQFATGCYQDSYSQNIVCICKSGYIGSRCDEC
ASGFYGNPLEMGGLCQECHCNHNVDVTDPESCDKQTGRCLKCLFHTEGEHCNHCRVGYYG
SALQQNCIKCVCNYLGTAHHQCVTTDECRCNQTTGQCPCLPNVTGLRCDRCASNTWKLAS
GTGCERCNCNEVHSLDMSCNEFTGQCRCMPGFGGQTCNDCQEYFWGDPSVECMKCDCNED
GIETQQCNQTTGQCICREGIAGARCNQCARGYSGTFPHCESCHACFSVWDKSIQELSTRT
TQLVAQANTIKSSGIVGPYQETVNTIQKKVNDIQNLLTQNPATEPLNNIGDLLEEAKKKI
KDLTDKVNWIESEIAATEEQNNITDKELNTLQIDAESLKTVVNELAEHXEYVKNSDVHGA
LDSVQKFFEQSLEAEEKVNASTTDPDNLVLESTAVRQTVEDMISEHKDHFEEQQKEHSSS
LEELAGKLQSLDLSPLNEKICGSPTGVSCTETQCGGANCRADDGTRKCGGTGCDGLLTLA
HEAWQNSMDFDTQILSALAEVDLLSKMVAEAKVKADEAKLNAQEVLLKTNNTKEKVDKSN
EDLRNLIKQIREFLTQDGADLESIEAVANEVLQLEMPTSPQQLQDLTNDIRVRVQSLSEV
EVILNQSAADIERAEALLDEARKSSIQATDVKVTADRVKEALEEAERAQNTAEKAIKTAA
EDIKGTEDLLTSIESETAASEQSLNNANVRLAQIEKDIDELKQKTTNTTDSAENIGSTIH
KVKQAADEAKQVLDTVLKEKYTVVENTIAEKSDMASEARKRAEKLQNEANELLSHANSKL
QLLKELEAKYEENQKALEEKAEMLMGLEKEVHSLLQTISHRVAIYSTCL
NT seq
5370 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggggatcctcagcagctgctgaaccacacgctgcagtgtggctctgtgccttt
gcccagggaccagagtttagctatggttgcgctgaaggaagctgttatccagccactggg
gatctgctgattggccgagcagacaagctcgccgccacctccacttgtggcctccacaaa
cctgaacctttctgcattgtcagccacctccaggaagagaagaaatgctttctgtgtgat
tcgcggactcctttcacagaaaatcctaacagccatcgcattgagaatgtagtcacaact
tttgctcacaaccgcctgaccacctggtggcagtctgaaaatggtttggaaaatgtttct
attcaactggacctggaggcagagttccacttcacccacctcatcatgacatttaagacc
tttcgcccagctgcaatggtgattgaacgatcttctgattttggtaaaacctggcaggtt
tacagatattatgcttatgactgcgaatcatcctttccagggattttaactgggcctttg
accaaagtggatgatgtcatctgtgactctcgttactctgatattgagccatccaccgaa
ggagaggttatctatcgagttttggatccagcctttaaaattgaagatccatacagtcaa
agaatacaaaatatgttgaagatcacaaacttgaggataaagtataccaagctccatact
ctgggcgataatttgttggattcccgaatagaaattaaagagaagtattactatgccatc
tatgacatggtagttcgtggcaactgtttctgttatggacatgctagtgagtgtgctcct
gttcatgattcagatgatgattatgatgaagatgttgaagtggaaggaatggtacatggg
agatgcgtgtgtcggcacaacactaaaggtttgaactgtgagctgtgtcaggacttccat
catgatctatcttggaggcctgctgaaggacgcaacagcaatacatgtcaaaagtgcaac
tgcaatggacactctgagaaatgtcactttgacatggctgtctacttggcctctggtaat
gttagcgggggtgtttgtgatgactgtcagaacaatacaatgggtcaccactgtgaacaa
tgcaaacctttctactaccagcacccggaacgtagtattcgtgctcatgacatttgtgaa
ccatgtaactgtgaccctgacggatcactgcaaggaggtgcctgtgaccgctatacagac
ctgtcaactggtctcattgctggacagtgccgctgtaaggcaaatgttgagggtgaacgc
tgtaatctgtgcaaagagagctactatgggctaagtgaagataatccagtgggatgcagc
tcatgtacctgtaaccatttgggcactcatccaggaggaaatccatgtgatgatcaaaaa
ggaaattgctactgtaaacgtttggtaaaaggaaggaactgtgatcagtgtctgcctcaa
cactggggactaagcaatgatttggatggatgtcgcccttgtgactgtgaccagggggga
tcttacaacaatgattgttctgcagagacggggcagtgtaagtgcaaacaccacatggtt
ggacgccgctgcaatgaagtcgagtctgggttttactttattgcactggaccactacact
tatgaggcagaggaggggaactttggacctggaacaactattgtacagcgaaaatatcca
gatgatcgttctccaacctggactgggattggatttgtacgagttcctgaaggagcatat
gtggaattctacatagataatcttccatactccatggaatacgatatagtgattcgctat
gagccacagctgccaaagaactgggaagaggcaaaaataactgtcttccgccctagtaag
attcatacaagtagtcgatgtgggaatacaattcctgacgatgacaaccaattggtttct
cttccttcaggatcaaggtatgttgttctacctcaggctgtatgctttgaaaaaggacta
aactacactatccgtttagaattaccacaatactctgctaacgatgaaatagaaactcct
tacacactcatagattcgcttgtgctcatgccccactgcaaatcactgcagatattctct
gcaggagaaacgagtgatggcctcacaaacagaatctgggaaacctttcagcggtaccgt
tgcctagagaatagtcggagcattactaaggctcacatgaccgatgtctgtaggaacatc
atctcaagtatttcttcaataatccatgatggtgccttgtcttgtcagtgtgaccctcaa
ggctctctcagcttagtttgtgatcccagtggtggacagtgccaatgtcgctccaatgta
gttggaagaaactgtgaccgatgtattcctgcaacctacagctttggtccaaatggctgc
agaccctgtgactgtcagccagaaggttctgtgcatggattttgccatcatacgactggt
caatgccagtgcaatgaaggagtttatggccgtcagtgtgaccagtgccagcctgggtac
tggggctttcctaactgtcacccatgtcagtgcaatggacatgtagatcactgcgacttg
gaaaccggtgaatgtttgggctgcagagggcacaccactggccatagctgtgagaggtgt
ctgtctggttattatggggatcctgtactcgggtcaggtgaccattgtcacccatgtcct
tgcccagatgatcctgagagtggacgccaatttgccactggttgttatcaggattcatat
tcccagaacattgtatgcatctgtaagagtggatatataggttctaggtgtgatgaatgt
gcttctgggttctatggtaaccctttggagatgggaggactttgtcaagagtgccattgc
aaccacaatgttgatgtgactgatccagagtcatgcgacaagcagacaggacgttgtctg
aaatgtctgtttcatactgagggtgaacactgcaaccactgcagagtgggctattatggt
tctgcactacaacagaactgcataaaatgtgtctgtaattacttgggtacagcacatcat
cagtgtgtcactacagatgaatgtcgttgcaaccagacgactggtcagtgcccttgtctt
ccaaatgtgactgggctaagatgtgatcgctgtgcatcaaatacatggaagctggcaagt
gggactggatgcgaacgttgcaactgtaatgaagttcactcactagatatgtcttgtaat
gagttcacaggacagtgtcgatgcatgcctgggtttggaggtcaaacttgcaatgactgc
caggagtacttttggggagatcccagtgtggaatgtatgaagtgtgactgcaatgaagat
ggaattgaaacacagcagtgtaaccaaacaactggtcagtgcatctgtcgggaagggatc
gcaggtgctcgatgcaatcagtgtgcacgagggtattctggtacattccctcattgtgaa
tcatgtcatgcttgcttcagtgtctgggataaaagtattcaagaactgtccactcggaca
actcaacttgttgcacaggccaacacaatcaaatccagcggcattgttggtccctaccaa
gaaaccgttaacaccatacagaaaaaggttaatgatattcaaaacctgctcactcaaaat
ccagccactgaaccacttaacaatattggggaccttctggaagaagcaaagaagaaaatc
aaggatcttacagacaaggtgaattggattgaatctgaaatcgcagcaactgaggaacaa
aataatataactgacaaagaactgaatacccttcaaattgatgcagagagtttaaaaaca
gtggtgaatgagcttgctgaacatnttgagtacgttaaaaactctgatgtccatggagct
ttggacagtgttcagaaattctttgaacagtctcttgaggctgaagagaaagtaaatgct
tctaccactgatccggataatttggtgctggaatccactgctgttcgacaaacggtggag
gatatgatttcagaacataaggatcactttgaggagcaacaaaaagaacattcaagtagt
ctagaagaactcgctgggaaattgcaaagcttagacctctcaccattaaatgaaaagatt
tgtggaagtccaacaggggtttcttgtactgagacacagtgtggaggtgcaaattgccga
gctgatgatggcactaggaagtgtggaggaactggttgtgatggactgctaacgttggcc
catgaagcctggcagaattccatggattttgacactcagatcttaagtgctttagcagaa
gtggatctactttctaaaatggttgcagaagctaaagttaaagctgatgaagcaaaacta
aatgctcaagaggtcctgttaaaaaccaataatacaaaagagaaagtggacaagagcaat
gaagatttgaggaatcttatcaaacaaatcagggaatttctcactcaggacggtgctgat
ctggagagcattgaggccgttgccaatgaagtattgcaattagaaatgccaaccagtcct
caacagcttcaggatctgaccaatgatattcgcgtccgtgtccagagtctttcagaggtg
gaggttatcttaaaccagagcgcagcagacattgaacgggcagaagccctgcttgacgaa
gcaaggaaatcgagcatccaagcaacagatgttaaagtcacagcagatcgtgtaaaggaa
gctctggaggaggcagagagggcccagaacacagcagaaaaagccatcaaaacagcagct
gaagacattaagggaacggaagaccttctgacctcgattgaatccgagacagcagcttca
gaacaaagtctcaacaacgctaatgtgcgcttggcacagattgaaaaagatattgatgag
ctaaaacaaaagacaactaataccactgattccgctgaaaacattggaagcacgatacat
aaagtcaagcaggctgcagatgaggccaaacaggttctcgatactgtgctgaaggaaaaa
tatactgttgttgaaaacacaattgcagaaaaatcagacatggcttctgaggcccgaaag
agagctgagaaactgcagaatgaagctaatgaattattatctcatgctaacagcaaactt
cagttactaaaggaactggaagcgaagtatgaagaaaaccagaaagcccttgaggaaaaa
gcagaaatgttaatggggctggaaaaagaagttcattcacttctgcagacaattagccac
agagttgctatctacagtacttgtctgtaa
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integrated database retrieval system
