Callorhinchus milii (elephant shark): 103191186
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Entry
103191186 CDS
T03088
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
cmk
Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cmk03016
]
103191186 (trub1)
Enzymes [BR:
cmk01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
103191186 (trub1)
Transfer RNA biogenesis [BR:
cmk03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
103191186 (trub1)
Prokaryotic type
103191186 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
103191186
NCBI-ProteinID:
XP_007910341
LinkDB
All DBs
Position
Unknown
AA seq
317 aa
AA seq
DB search
MGSDPGRAVLAARSVRLRGLSGLFAIYKKKGPTSAEALNLLKSKLLEEAGIEQYPMKRKR
QVLKMGHGGTLDSAATGVLVVGIGNGTKMLSAMLSGSKKYTTVGEFGKATDTLDTIGKVT
EEKPYDHITKEDLENALEKFKGNIMQAPPLYSALKKGGQRLSCLARKGEAVEARPARPVV
VHSLSVQDFSPPLFTLEIECGGGFYVRSLVSDLGKELSSCAHVKELERTKQGPFTLEEHA
LPEEKWTIDEIAKSVHANAHLLPVEEPGCKKLKVDTLENSEQQTEAGVRQEALDMEEAKS
NENKMQPLFCYTSGETE
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgggcagtgacccgggacgggcggtgttggccgcgcggtcggtgaggctgaggggcctc
agtgggctgttcgccatctacaagaagaaaggaccgacctcagccgaggccctgaaccta
ctgaagagcaaactgctggaagaagccggtatcgagcaatatcctatgaaaaggaagagg
caagtcctgaagatggggcacggaggcactctcgacagtgcagcaacaggtgttcttgtg
gttggcattggaaacgggaccaaaatgctcagtgcgatgttatcaggctccaagaaatat
acaactgttggagaatttggaaaggccacagacacgctggacactataggcaaggtgact
gaagaaaaaccatatgatcacataacgaaggaagatctggaaaatgctctggagaaattc
aagggaaatataatgcaggctcctcccctgtattccgctctgaaaaaaggtgggcagcgg
ctgtcgtgtttggcgaggaaaggcgaagcagtggaggcgagacctgccagacctgtggtg
gttcacagcctctctgtacaggacttcagccctcctctcttcactctcgaaattgaatgc
ggaggtggcttctatgtccgaagtttggtcagtgatcttggtaaagaactgtcgtcctgc
gctcacgtgaaggagttggagagaaccaaacagggtccttttacattggaagaacatgcg
cttccagaggagaaatggacaattgacgaaatagccaaaagtgttcacgctaacgcacac
ttgcttccagtggaggagcccgggtgtaagaaattgaaggtggacactctcgaaaattct
gagcaacaaacagaagctggtgttcgtcaggaggcacttgatatggaagaagcaaagagt
aacgaaaataaaatgcaaccattattctgttataccagtggcgaaacagaataa
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