KEGG   Callorhinchus milii (elephant shark): 103191402
Entry
103191402         CDS       T03088                                 
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103191402 (cstf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmk03019]
    103191402 (cstf1)
Messenger RNA biogenesis [BR:cmk03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     103191402 (cstf1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 WD40_WDHD1_1st Beta-prop_WDR3_2nd CSTF1_dimer Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_Aladin Beta-prop_VPS8 Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_IFT140_1st Ge1_WD40 Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Beta-prop_DCAF12 Cytochrom_D1 Beta-prop_NWD2_C Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd DUF7099 Frtz Beta-prop_SPT8 VPS8_N
Other DBs
NCBI-GeneID: 103191402
NCBI-ProteinID: XP_042197770
LinkDB
Position
Unknown
AA seq 447 aa
MLNFGRIASRYRNTPDMFRPKVTLKDRQHLYRLIISQLLYDGYTNIASNLMNEIKPHSIC
SPSEQLLHLAKLGMENDDNTVQYAIGRSDTVAPGTGIDMEFDADVQTMSPEAAEYETCYV
TSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKSAMPLEVMMNETAQQNMENHP
VIRTLYDHVDEVTCLAFHPTEQILASGSKDYTLKLFDYSKPSAKRAFKYLQEAEMLRSIS
FHPSGDYILVGTQHPTLRLYDINTFQCFVSSNPRDQHTDAICAVSYNPSANMYVTCSKDG
NVKLWDGVSNRCITTYEKAHDGAEVCSIMFSRNSKYVLSSGKDSIVKLWEISTGRTMVKY
TGAGLSGRQTHRTQAVFNHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRCIV
HSPTNPGFMTCSDDFRARFWYRRSSTD
NT seq 1344 nt   +upstreamnt  +downstreamnt
atgctgaacttcggcagaatcgcctcacgctacagaaatactccggatatgttccgacct
aaagttacccttaaagaccgccagcacctttaccgactgattatcagccagctcctgtat
gatgggtacactaacattgcatcaaacctgatgaacgagattaagccacattcaatatgt
tctccctccgagcaactgttgcatcttgccaaacttggaatggaaaatgacgacaacaca
gttcaatatgctattgggagatcggacactgtggcccctgggacaggcattgacatggag
tttgatgctgatgttcagaccatgtccccagaggctgctgagtacgagacgtgctacgtc
acatcacacaagggaccttgtcgagttgccacctacagccgagatggacagttgattgct
acaggttcagctgatgcttccattaagattttggatactgagaggatgctagcaaagagt
gctatgcccttagaggttatgatgaatgagacggcacagcagaacatggagaatcaccct
gtaatccgcacactgtacgatcatgtggatgaggtcacgtgccttgctttccaccccacg
gaacagatattggcttcgggttcaaaggactacacactgaagctgttcgactattccaaa
ccttcagccaaaagggctttcaagtatctccaggaagcagaaatgctgcgttccatctcc
tttcatccttctggggactacatcctggtgggcactcagcatcctacactgcgcttgtat
gacatcaatactttccagtgttttgtttcgagcaaccctcgtgatcagcacacagatgcc
atctgtgctgtcagctacaaccccagcgccaacatgtacgtcacgtgcagcaaggatggc
aacgtcaagctttgggatggcgtgtccaaccgctgcatcaccacctacgagaaggcgcac
gatggagctgaggtctgctccatcatgttctcaagaaattcaaaatatgttttgtcaagc
ggcaaggattctatcgtgaaactgtgggagatatcgactggccgtacaatggtcaaatac
acaggagcaggactgagtggcagacagacccatcgcacccaggctgtcttcaaccatacg
gaggattatgtgctgctccctgacgaaaggaccatcagcctctgctgctgggactcgcga
acagctgaacggaagaacctgctgtctctagggcacaacaacattgttcgctgcatagtc
cactctcctaccaatcctggtttcatgacctgcagcgatgacttcagagctagattctgg
tacagaagatccagcacagattga

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