Carnobacterium maltaromaticum: BN424_2007
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Entry
BN424_2007 CDS
T02342
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cml
Carnobacterium maltaromaticum
Pathway
cml02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cml00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BN424_2007 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cml03021
]
BN424_2007 (rpoD)
Transcription machinery [BR:
cml03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BN424_2007 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
DUF1474
TFC3_eWH
Motif
Other DBs
NCBI-ProteinID:
CCO11448
UniProt:
K8EI02
LinkDB
All DBs
Position
complement(2028645..2029757)
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AA seq
370 aa
AA seq
DB search
MSTQAKGDKKTMKKATDKFILKHKLKAMVHIDEVTKELALPNHLTVEEIDTLIQRIEDAG
VSVVGDDGGPTERQLLVPAIEKIEIKKADLAPPAGVPMDDPVRMYLKEIGQVDLLTGAEE
VTLAEQVLEGNQDARNHLAEANLRLVVSIAKRYMGRGMQFLDLIQEGNLGLMKAVEKFDH
TKGFKFSTYATWWIRQSITRSIADQARTIRIPVHMIETINKLVRIQRQLIQDLGREATPE
ELGAEMDLSTERIREILKISQEPVSLETPIGEEDDSQLGDFIEDHGAADPEEQASYELLK
LQIEDALDTLTDREENVLRLRFGLDDGRIRTLEEVGKVFGVTRERIRQIEAKALRKLRHP
SRSKQLKDYL
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
ttgagtacacaagctaagggagataaaaaaacaatgaaaaaagccactgataaatttatt
ttaaagcacaaattaaaagcaatggttcatattgatgaagtaacaaaagagttagcctta
cccaatcatttaactgttgaagaaatcgacacattgattcagcggattgaggacgctggg
gtaagtgttgttggtgatgatggtggtccgactgagcgtcaattattggttccagcaatt
gaaaaaatagaaataaaaaaagctgatttagctccaccagcgggtgtacccatggacgac
cctgttcgcatgtatttaaaagagattggtcaggttgatctattaacaggtgctgaggaa
gtgactttggcagagcaagttttagaagggaatcaagatgctagaaatcatttagcagaa
gccaatttaagactagttgtaagtattgccaaacgttatatgggtcgaggcatgcaattc
ttagatttaattcaagagggaaacttaggtctaatgaaagctgttgaaaaatttgatcat
actaaaggctttaaattttcaacatatgcgacttggtggattcgccaatctattacacgt
tctattgcggatcaggcgagaacaatccgtattccggttcatatgattgagacaatcaat
aagcttgttcgaattcaacgacaattaatccaagacttaggtcgtgaagcgactcctgaa
gaattaggtgctgaaatggatttatcaacggaacgtattcgagaaatattaaaaatttct
caagaaccagtttcgttagaaacgccaattggagaagaagatgattctcaactaggtgat
tttattgaagatcacggggcagctgatccagaagaacaagcttcttatgagcttttaaag
ctacaaatagaagatgcattggatacactaacagatagggaagaaaatgtcttacgcctt
cgatttggactagacgatggtcgtattcggacgttggaagaagtgggtaaggtttttggc
gtaacgagagaacgaattcgacaaattgaagcaaaagctttgcgtaaattacgtcatcca
agtcgttctaagcaattaaaagattatttataa
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