Carnobacterium maltaromaticum: BN424_589
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Entry
BN424_589 CDS
T02342
Symbol
cshA
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cml
Carnobacterium maltaromaticum
Pathway
cml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN424_589 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cml03019
]
BN424_589 (cshA)
03009 Ribosome biogenesis [BR:
cml03009
]
BN424_589 (cshA)
Enzymes [BR:
cml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN424_589 (cshA)
Messenger RNA biogenesis [BR:
cml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN424_589 (cshA)
Ribosome biogenesis [BR:
cml03009
]
Prokaryotic type
rRNA helicases
BN424_589 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Helicase_RecD
PFO_beta_C
Motif
Other DBs
NCBI-ProteinID:
CCO10065
UniProt:
K8E2C0
LinkDB
All DBs
Position
636568..638193
Genome browser
AA seq
541 aa
AA seq
DB search
MKFSELGLDPELLQSVERLGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPML
QKIDLKNRAVQGLVIAPTRELAIQTQEELFRLSRDKKVRVQVVYGGADISRQIRSLKDQP
HIVVGTPGRLLDHINRRTLKLDQVETLVLDEADEMLNMGFLEDIEKIIKEVPKTRQTLLF
SATMPDAIKRIGVKFMNEPEHVRIQATAMSDSLIDQYYVRCKDFEKFDIMTRLLDVQTPE
LTIVFGRTKRRVDELSKGLEMRGYRAEGIHGDLSQQKRMSVLKSFKKGDLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMSVTFITPNEMGYLRVIEDLTKK
KMTTLRPPTNAEAFEGQVKAAMETAEELVKSNDLERYEKAAAQLLEDYDTTDIAAAFLKS
ISKDASEIPVKITPERPLPSRKGGSGGGGGNRGGASRGKGGYRGGSGGGERRGGAQRGGK
DNRRSGGGAGSGGSWNKDAKRGSNAGGSSSSEARKGGRGNSSDNRRSGGGDRNFTIRNKE
N
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattttcagaattagggttagaccctgaattattacaatcagtagaacgtttaggc
tttgaggaagcaacaccaatccaggaacaaacaattccattggcacttgaaggcaaagat
gttattggacaagcacaaactggtactggtaaaacagcagcatttggtttgccaatgtta
caaaaaatcgatcttaaaaaccgcgctgttcaaggtttggttattgcaccaactcgtgaa
ttagcaatccaaacacaagaagaattattccgtttgagtcgcgacaaaaaagttcgtgtt
caagtcgtttatggtggagctgatatcagtcgccaaattcgttcattaaaagatcaacca
catattgttgttggtactcctggacgtttgcttgatcatattaaccgtcgcacattaaaa
ttagatcaagttgaaactctagttttagatgaagcggatgaaatgttaaacatgggattc
ttagaagatatcgaaaaaatcattaaagaagttccgaaaacacgtcaaacattattattc
tcagcaacaatgccagatgcaattaaacgtatcggtgttaaatttatgaacgaacctgaa
catgtgcgcattcaagctacagcaatgtctgatagcttaattgatcaatattatgttcgt
tgtaaagatttcgagaaatttgatattatgactcgtttattagatgttcaaacaccagaa
ttaacaatcgtattcggacgtacaaaacgacgcgttgatgaattatcaaaaggattagaa
atgcgtggttaccgcgctgaaggaatccatggtgatctttcgcaacaaaaacgtatgagt
gttttaaaatcatttaaaaaaggtgatttagacattttagtggcaacagatgtggctgct
cgtggattagatatttctggagtaacacatgtatacaactatgatattccacaagatcca
gaaagctatgttcaccgtatcggtcgtactggtcgtgctggtaaagaaggtatgtcagtt
acattcattacaccaaatgaaatgggctacctacgtgtaattgaagatttaactaagaaa
aaaatgactactttacgcccaccaacaaatgctgaagcgtttgaaggtcaagtaaaagca
gctatggaaacagcagaagaattagttaaaagtaatgatttagagcgctatgaaaaagca
gctgctcaattattagaagactatgatacaacagatattgcagctgcattcttgaagagt
atttctaaagatgccagtgaaattcctgttaaaatcactccagaacgtccattaccaagc
cgtaaaggtggaagtggtggcggtggtggaaaccgtggcggcgcaagtcgtggtaaaggt
ggataccgtggtggaagtggcggcggagaacgtcgtggcggagcacaacgtggtggaaaa
gataatcgtcgtagtggtggcggagctggttctggcggaagctggaataaagatgctaaa
cgtggcagcaatgctggtggaagtagcagtagcgaagctcgcaaaggcggacgcggtaat
tcttcagacaatcgtcgtagtggcggcggagaccgtaacttcactattcgtaacaaagaa
aactaa
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