Carnobacterium maltaromaticum: BN424_737
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Entry
BN424_737 CDS
T02342
Symbol
rtcB
Name
(GenBank) uncharacterized UPF0027 family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cml
Carnobacterium maltaromaticum
Brite
KEGG Orthology (KO) [BR:
cml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cml03016
]
BN424_737 (rtcB)
Enzymes [BR:
cml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BN424_737 (rtcB)
Transfer RNA biogenesis [BR:
cml03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BN424_737 (rtcB)
Prokaryotic type
tRNA splicing ligases
BN424_737 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CCO10201
UniProt:
K8ENX1
LinkDB
All DBs
Position
complement(794044..795222)
Genome browser
AA seq
392 aa
AA seq
DB search
MLTLKGKYNEAVVYTDMLDDHTISQIISLCNQEFAKDSQIRIMPDTHSGKGCVIGTSMTI
TNQVVPNLVGVDIGCGLYVVKLKPGRLKLNFDKLDQLIRNRIPSGQSNHDTAMHQFDFTK
LHAPVHEGWAMRSIATLGGGNHFIEVNQGADGIYLVIHSGSRSLGKEVAEYHQEIAYQTL
ATRRKELKIELKHQMKKGLIAEANRLATLRETIKIPYELSYVEGSNFENYLNDMKIAQAY
AALNRKLMAETILKGMKWDNFVISTFDCAHNYIDTENLMLRKGATSAQKGEALIVPLNMR
DGSILATGLGNPAWNYSAPHGAGRILSRSKAKAQISLDSYQKTMRHIWSTSVSKHTLDEA
PSAYKPSKQLQKDVTGTMKIQEIIKPLYNFKG
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgttaacattaaaaggaaaatataatgaagctgttgtttatacggatatgcttgatgat
catacgatcagtcaaattatttcactttgtaatcaagaatttgctaaggatagtcaaatt
cgaattatgcctgatactcatagtggcaaaggttgtgtgattggaactagtatgaccatc
acaaaccaagtcgtaccaaatcttgttggagtcgatattggttgtggactttatgttgta
aagttaaaacctggacgtttaaaattaaattttgataagttagaccaattgattcgcaat
cgaattcctagtgggcaaagcaaccatgataccgcaatgcaccaatttgatttcacaaaa
ctacatgcacccgtccatgaaggctgggccatgcgtagtatcgcgacacttggtggaggc
aaccattttattgaagtgaaccaaggtgcagatggcatctatttggtcattcatagtggt
agccgcagtctcggcaaagaagtcgcagaataccatcaagaaatagcctatcaaacatta
gctactagacgaaaagagttaaaaatagaattgaagcaccaaatgaaaaaaggtttgatt
gcagaggccaatagactagcaacccttcgtgaaacaattaagattccgtatgagctttct
tatgtagaaggaagcaattttgaaaactatttgaatgatatgaaaatcgcccaagcttac
gctgccttaaatcgtaaattgatggctgaaacgattttaaaagggatgaaatgggacaac
tttgtcatcagtacttttgattgcgctcataactatatcgatactgaaaacttaatgctt
cgaaagggcgctacctcagctcaaaaaggggaagcacttattgttccattaaatatgcgt
gatgggagtattcttgcgactgggttaggcaatccagcctggaattattctgcccctcat
ggagctggtcggattttaagtcgttccaaagctaaagctcaaatcagcctagacagctat
caaaaaacaatgcggcatatttggagtacttccgtttctaaacataccttagacgaagca
cctagcgcctataaaccaagtaaacagttacaaaaagatgtgacgggtactatgaagatt
caagaaattattaaacccttatataattttaaaggttga
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