Chlamydia muridarum Nigg3 clone G0.1.1: NC80_00645
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Entry
NC80_00645 CDS
T03404
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cmm
Chlamydia muridarum Nigg3 clone G0.1.1
Pathway
cmm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NC80_00645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmm03400
]
NC80_00645
Enzymes [BR:
cmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NC80_00645
DNA repair and recombination proteins [BR:
cmm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NC80_00645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
DUF3638
AAA_30
RecG_dom3_C
AAA_19
PhoH
Motif
Other DBs
NCBI-ProteinID:
AIT90357
UniProt:
A0A069ZUM1
LinkDB
All DBs
Position
complement(149322..152564)
Genome browser
AA seq
1080 aa
AA seq
DB search
MDFDPTSINFSHFSLLKDSKLPSLVENLHSGAKAFIVAKLFKELRRSIVIITTPARVDDL
FEDLTTLLKESPLEFPTSEIDLSPKLVNIDAVGKRDHILYSLQKQCAPVVCITTLKALLE
RTPSPESLLSDHLELKVGEELDPDTLVDLCKNLGYRHEALAREKGDFAFRGGIVDIFPLS
SSEPFRIEFWGDRISSIRSYNPSDQLSTGKISQITISSATAIIPTDKLSHSLLDYFETFP
LCIFDEVSSLEDNFSDIAGILSSLPKRFIPIQDLCRRILRESVPLFFEENLFPNLLTHKD
TGCALEVFHEKISVQRVSLPFIYPHALIETSHEQNPLLAFLKTFQDFCSDRTLSLALYSS
NTKSLKEAHDLTASFIKKPQIYDCPKALSSSFALVESGFAAISLSEFAANKVLRRQKQRN
YFSSTTEEVYVPVPGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYADKARLYVPSD
QAYLISRYVGASEKAPDLHHLNGAKWRRSRELSEKSVILYAEKLIQMEAQRSTANSFIYP
THGEEVIKFAESFPYEETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVK
AVCDGQKQVIVMVPTTILANQHFETFSQRMAGLPITIGLLSRFSQGKAMKKTLEDVAQGR
IDILIGTHKVINKSIEFHNPGLLIIDEEQRFGVKAKDALKERYPTIDCLTVSATPIPRTL
YLSLSGARDLSLITMPPLDRLPVSTFVMEHTEETLSAAIRHELLRGGQVYVIHNRIEGIF
RLGETIRTLIPEARIGVAHGQMHSDELANIFYKFKTQQTNVLVATALIENGIDIPNANTI
LIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPASKRLEALNKQEYGGGMK
IALHDLEIRGAGNILGTDQSGHISAVGFNLYCKLLKKAVAALKHKKKPMLFHDDVRIEFP
YHSRIPEDYIDLASMRIEFYQKIGNAESKEELEAIEEELRDRFGPLPEEVYWLFALAQIR
LIALEYHLSSIKGTGNALYIQQYHDKEKQVQKTLPYSLSPTPTLLVKEVQESIEKAFPKK
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgacccgactagcataaatttttcacatttttctttattaaaagactccaag
ctcccttctttagttgaaaatcttcactcgggagctaaggcttttattgtagcgaaacta
ttcaaagaactgcgacgctctattgttattataacaacacctgcaagagttgatgattta
tttgaggatctcacaactctcctcaaagagtctcctcttgaattccctacttcggagata
gatttatctccgaaactggtcaatattgacgctgtagggaaaagagatcatatcttgtat
tctcttcaaaaacagtgcgcccctgttgtctgcatcaccacactaaaagctttgctagaa
aggactccttctccagaatccttgcttagcgatcatctcgaacttaaagtaggagaagag
ctcgatcctgataccttagtagatctttgcaaaaatctaggataccgccatgaagctctt
gctagagaaaaaggtgattttgcttttcgaggagggattgttgatattttccccttatcc
tcttcggaacccttccgaattgaattttggggagaccgcatttcttctattcggtcttat
aacccttccgatcaactttctactgggaaaatttctcaaatcacaatctcttctgctaca
gcaatcattccaacagacaagttatctcattctcttttagattatttcgaaacgttcccc
ctctgtatctttgatgaggtttcttcacttgaagataatttctcagatattgctgggatt
ctatcctccttaccgaaacgctttattcctattcaagatctgtgtcgacgaatactaaga
gaatctgttccgctattctttgaagaaaatctatttccaaatcttcttacacataaagat
accgggtgtgctctagaagtttttcatgaaaaaatctctgttcaaagagtttctttgcca
tttatttatccccatgcgctaatagaaacaagccatgaacagaaccctctgcttgcattt
ttaaaaactttccaagacttttgctctgatcgtacactctctttagctctatatagctcc
aatactaagtccttaaaagaagcccatgatctaacagcgagctttatcaaaaagcctcaa
atttatgattgccctaaagcactttcttctagttttgctttagtagaatctgggttcgca
gctatttccctttctgaattcgctgctaataaggttctccgcagacaaaaacagcgaaac
tatttttcttccacaacagaagaagtatacgttcctgtcccaggagagaccgttgtccat
ttgcacaatggaattgggaaatttatcggcatagaaaaaaaacctaatcatctcaatatt
gaaacagattatttggtcttagaatatgctgataaagctcggctgtatgtcccatcagat
caagcttacctaatttcccgctatgttggagcttcagaaaaggcgcctgatctacatcac
ctaaacggagcaaaatggagacgctcccgagagctttctgaaaaatctgtaatcctttat
gcagaaaaactcattcaaatggaggctcaacgctcaacggcaaattctttcatttatccc
actcatggcgaagaagttatcaaatttgccgaaagttttccctatgaagaaacccctgat
cagcttaaggctattgatcagatctacgcagatatgatgtctgataaattaatggaccgc
cttatctgcggggatgctggatttggaaaaacagagatcatcatgcgcgcagcagtaaaa
gcagtgtgtgacggccaaaagcaagtgatcgttatggttcctacaacaatcttagctaac
caacattttgaaacattttcccaacggatggccggccttcctattacaatcggattactt
tcccgattttctcaagggaaggcaatgaaaaaaactttggaggatgttgctcaaggaagg
attgatatcttaattggcactcataaagtcattaataaatctatagaatttcacaatccc
ggacttcttatcattgatgaggagcaacgttttggagtaaaagctaaagatgctttgaaa
gagcggtatcccaccatagactgccttactgtttctgcaactcccatcccaaggacttta
tatctgtctttgtcgggagccagggatttgtctctcattacgatgccgccgctagatagg
ctccctgttagcactttcgtcatggagcacactgaagaaaccttgtctgcagcgatacga
catgaacttcttcgaggaggccaagtttacgttattcataatcgaatagagggtattttc
cgtttaggagaaaccattcgaactttgattccagaagctcgtattggggttgcccacgga
caaatgcattcagacgaacttgctaacattttttacaaatttaaaactcaacaaaccaat
gttctcgtcgccacagctttaattgaaaatggtatcgacattcctaatgcaaataccatt
ttaatcgatcatgcagataaattcggaatggcggatttatatcaaatgaaaggtcgtgtt
ggtcgttggaataaaaaagcctactgttactttctcgtcccccatttagatcgcctctca
ggtccagcttctaagcgcctagaggcattaaataaacaggaatatggaggaggaatgaaa
atagctcttcatgatttagaaattcgaggggctgggaatattttaggaacggatcaatct
ggacatattagcgctgttggctttaacctgtattgcaaattactgaaaaaagctgtggcc
gctctgaaacataagaaaaaacccatgcttttccatgatgatgtgagaattgaattccct
tatcattcgcgtattcctgaagactatatcgacttagcgtctatgcgcatagagttctac
caaaaaattggaaatgcagaatctaaagaagagttagaagctatagaagaagaacttaga
gatagatttggacctttgccagaagaagtttattggttgtttgctttagcacaaattcgc
ttaattgcactggaataccatctttctagtattaaaggaacagggaacgctttatacatc
cagcaatatcatgataaagagaagcaggttcaaaaaacgttaccttattctttgtcccca
acaccaacacttttggtgaaagaggtccaagaatctatagaaaaagctttccccaaaaaa
taa
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