Cucumis melo (muskmelon): 103482675
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Entry
103482675 CDS
T03195
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
cmo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103482675
09123 Folding, sorting and degradation
03018 RNA degradation
103482675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103482675
03041 Spliceosome [BR:
cmo03041
]
103482675
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103482675
mRNA degradation factors
5'-3' decay
Lsm complex
103482675
Spliceosome [BR:
cmo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
103482675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
103482675
NCBI-ProteinID:
XP_008437171
UniProt:
A0A1S3ATI1
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Position
12:26728704..26731739
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AA seq
98 aa
AA seq
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MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtggacctggacttgattctctggttgatcaaacaatatcagtcatcacaaac
gacggccgcaatatcgtgggagtcttgaaagggtttgaccaggctacaaatattattctt
gatgaatctcatgaacgtgtttactcaaccaaggaaggcgttcaacaacttgttttgggt
ctatatataatcagaggggacaatataagcattgttggggagctagacgaggaacttgat
tctaatctagacttgtccaaattgagagctcatcctctcaaacctgtgatccattaa
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