Cucumis melo (muskmelon): 103483462
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Entry
103483462 CDS
T03195
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03440
Homologous recombination
cmo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103483462
03450 Non-homologous end-joining
103483462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmo03032
]
103483462
03400 DNA repair and recombination proteins [BR:
cmo03400
]
103483462
DNA replication proteins [BR:
cmo03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
103483462
DNA repair and recombination proteins [BR:
cmo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
103483462
BRCA1-C complex
103483462
NHEJ (non-homologous end-joining)
MRX complex
103483462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
AAA_21
Rad50_zn_hook
SbcC_Walker_B
AAA_29
AAA_16
ABC_tran
AAA_13
PRK
AAA_22
Motif
Other DBs
NCBI-GeneID:
103483462
NCBI-ProteinID:
XP_008438322
UniProt:
A0A1S3AWR7
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All DBs
Position
6:complement(2508944..2523442)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENRNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAVLENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAHEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTESVKG
QMQELEKNIQDVDAKIHHAETLLKDVRKLQDQISTKTAERSTLYKEQQKQYAALAEENED
TDEELKEWKTKFEERIAILESKVSKLEREMNDMETKSSFLKQTINEHIWEISKLQTEAEV
HMSLKNERDSTIEELFARHNLGSVPNTPFSDEVASNLTNRIKLRLVDLDKDMQDKRLSND
VELKTAWDCYMDANDRWKNIDAQKHAKADIKRGIVKRIEEKESERDSFELQISHVDLSHI
DEREKNMQIEVERKTNQLAEREFESTIRQKQSDLYGIEQKIKAVNREKDVMAGDSEDRVK
LALKKAELDSHKKKHRKIIDEYKDKIRGVLKGRFPPEKDLKKEITQALRAVGMEYDDLNS
KSREAEKDVNMLQMKIQEVNHNLSRYQKEMESRKRFVESKLQFLDPHSFSVDLYLKALEG
AKEKKDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFTAEEEDEFVKKQRVKAAS
SAEHMKVLAVESSSADSHFQQLDKLRMVFEEYVKLSNETIPNAEKELHQLNEELDEKSQA
LDDVVGVLAQVKADRDSVENLVQPIDTADRLYQEIQTWQKQVDDLVYKLDFRGKGVKTLE
EIQSELNTLQNTKDGLHNELEKLRDEQRYMENDLANIQIRWHTLREEKVKAANTLRDVRK
AEEELDRLTEEKGQVDLDEKHLAEALIPLSKEKDKLLNDYNELKDKLNREYEELGDKKRK
FQQEVETLLRTTSKIKEYLDLKKGERLKELQEKKAQAESQLQGCDSRKQEILAELNKSKD
LMRNQDQLRRNIEDNLNYRKTKAEVDELARDIESLEEQILKIGGVSAVEAEIGKLSQERE
RLLSELNRFHGTMSVYQSNISKNKIDLKHVQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVTKDDHQHSIIESQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcacagtggacaagatgttgattaaaggcattcggagtttcgaccccgaaaatagg
aacgtcattaccttcttcaagccattgacgctgatcgttggccctaacggtgctgggaaa
actaccataattgaatgcttgaagctctcttgtactggcgagttgcctcccaatgccagg
tccggccacagcttcattcacgaccctaaggttgcaggagagacagagacaaagggacaa
atcaagcttcggtttaagacagcggcaggtaaggacgtggtttgcataaggtcattccaa
cttactcagaaggcatccaaaatggaatataaagcaatagaaagcgtgctccagacgata
aatccacataccggagagaaagtttgtctcagctatagatgtgctgacatggatagagag
attcctgcattaatgggtgtgtcaaaggctgttctggaaaatgtgatatttgttcaccaa
gatgaagctaattggccattgcaagatccttcaactctgaagaagaaatttgatgatatc
ttctctgctacaagatatacaaaggcattggaagtcataaagaagcttcacaaggatcag
gctcatgaaataaagacttacaaactaaagttggagaatcttcaaactttaaaagatgca
gcatataagctcagggaaagcatttctcaggatcaggaaaaaacagaatctgtaaaaggt
cagatgcaagaattggagaagaacattcaagacgtcgatgccaaaattcatcatgctgaa
acactcctgaaagatgtgcggaaactacaagatcaaatatctaccaagactgccgaaaga
agcactctatataaggagcagcagaagcagtatgctgctctcgctgaggagaatgaagac
actgatgaagaactgaaggaatggaaaaccaagtttgaagaaagaattgctattttggag
tctaaggtaagcaagttggagagggagatgaatgacatggagacaaaaagttcctttctt
aagcagacaattaatgaacatatatgggagatcagtaagcttcaaacagaagctgaggtg
cacatgtcattgaagaatgaacgtgattctactattgaagaactttttgcaagacataat
cttggttctgtaccaaatactcctttcagtgacgaagttgcatccaacctaaccaataga
ataaaattaagactagtagaccttgacaaggatatgcaagataaaaggctttcaaatgat
gttgaacttaagacagcatgggattgctacatggatgcaaatgatcgttggaaaaatatt
gatgcccaaaaacatgctaaagcggacattaaaagaggaatcgtgaaaagaattgaagag
aaggaaagcgagcgcgattcttttgaacttcaaatttctcatgttgatctttctcacatt
gatgaaagagaaaaaaacatgcaaattgaggttgagagaaagacaaaccagcttgctgaa
agagaatttgaatcaacaatacgtcaaaagcaaagtgatctatatggcattgagcagaaa
attaaggctgttaacagagagaaggacgtaatggctggtgactctgaggacagagtaaaa
cttgctctcaagaaagcggagttagatagtcataaaaagaagcaccgtaagataattgac
gagtacaaggacaaaattagaggagtgctgaaggggagatttcctccagagaaggatttg
aaaaaagaaatcactcaagcactcagggctgttggcatggagtatgatgacctaaattct
aaatctcgtgaagctgagaaggatgtgaatatgttgcagatgaaaatacaggaagttaat
cataacctttccagataccaaaaagaaatggagtcaagaaagagatttgttgaatccaaa
ctccagttcttggatccacactcctttagtgtagatttgtatctcaaggccctggaaggg
gctaaggagaaaaaagatgtgcaaaaaagcaagtacaatattgcagatggtatgcgtcaa
atgtttgatccatttgaaagagttgcccgtgcccatcatgtttgcccttgttgtgagcgc
cccttcacagcagaagaagaagatgaatttgttaaaaagcaaagagtgaaggctgcaagt
tctgctgagcatatgaaagtgcttgcagtggagtcttcaagcgctgattcccattttcag
caactggataagctccgcatggtttttgaagaatatgtcaaacttagcaatgaaacaatt
cctaatgcagagaaagaacttcatcaacttaacgaagagctagatgagaagtcacaggcc
cttgatgatgtggtgggtgtcttagcgcaagtcaaggccgatcgggactcagttgagaac
ttggtgcaacctattgacactgccgacaggctttaccaagaaattcaaacttggcaaaag
caagttgacgacttggtctacaagcttgattttcgagggaaaggtgtgaaaacattggaa
gaaattcagtcagagttgaatacattgcaaaacaccaaagatggtttacacaatgaacta
gagaagctaagggatgaacaaagatacatggaaaatgatttggccaacattcagataagg
tggcacactctgagagaggaaaaagtgaaagcagctaatactttgcgtgatgttaggaag
gctgaagaagagttggaccgtctgactgaggaaaaaggtcaagttgatcttgatgaaaag
catttggcagaagcccttatccctttgtcaaaggagaaagataaattacttaatgactat
aatgaactaaaagataagcttaatcgtgaatatgaggagctgggtgataaaaagaggaaa
tttcagcaggaagttgagacacttcttagaacaacatctaagattaaagagtatcttgat
ttaaagaaaggtgagaggctgaaagaactgcaggaaaagaaggcacaggctgaatctcaa
cttcaaggttgtgacagtaggaagcaggaaatattggctgaattaaacaaaagcaaggac
ttgatgcggaatcaagatcaattaagaaggaacattgaggataacttgaactaccggaaa
acaaaggctgaagttgatgagcttgcccgtgatattgaatcattggaagagcaaatttta
aagatcggaggggtttcagctgttgaggctgaaataggaaaactgtctcaggaaagagag
aggctattgtctgagctaaacaggttccatgggacgatgtctgtctatcaaagcaatatt
tcaaaaaataaaattgatttaaaacatgtgcaatataaggacattgacaagcggtatttt
gatcagctgatccagcttaagacaactgagatggcaaacaaggatttggatagatattac
aatgcccttgacaaagcacttatgcgcttccacaccatgaaaatggaggaaataaataaa
attataagggagttgtggcaacaaacataccggggacaggatatagactacataagtatt
cattcagattctgagggtgcaggaactcgttcatatagctacaaggttctcatgcagact
ggagatgcagaactcgaaatgagaggaaggtgcagcgctggtcaaaaggttcttgcttct
cttataattcgattggcattggctgaaacgttctgcctcaattgcggaatactcgctcta
gatgagccaaccactaatctagatggtccaaatgctgaaagtcttgctgcagctcttcta
agaatcatggaggacaggaaagggcaggagaactttcagctcatagtaattacacatgac
gagcgtttcgctcagctaattggtcagagacagcatgcagagaaatattatcgtgttaca
aaagatgaccaccaacacagcataatagaaagccaagagatatttgattga
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integrated database retrieval system
