Cucumis melo (muskmelon): 103484188
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Entry
103484188 CDS
T03195
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103484188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmo03041
]
103484188
03009 Ribosome biogenesis [BR:
cmo03009
]
103484188
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103484188
Spliceosome [BR:
cmo03041
]
Complex A
U1 snRNP components
U1 related factors
103484188
Complex B
103484188
Ribosome biogenesis [BR:
cmo03009
]
Eukaryotic type
Pre-60S particles
Helicases
103484188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Transformer
Motif
Other DBs
NCBI-GeneID:
103484188
NCBI-ProteinID:
XP_050942090
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All DBs
Position
6:4620036..4637898
Genome browser
AA seq
1166 aa
AA seq
DB search
METGDSAPPSLGPRYAPDDPTLPKPWKGLIDGSSGLSYYWNPETNVTQYEKPVSLPPPLP
LGPHPGVSTSKPTSIPEAHSMVSNGTLAPHVQQNHHVLQQDGQLNNQLSQQPGHLISQQH
NSGQVVNHHPGMQMAPDGRQHSSQSNQVMPQQGVFAMSSQHIGPQQVHQGQKMAHANQQM
SQHPNIQPPQNPGQALQNPGQQMPQPSVQHLGLPNIQNPTPLVGQPQGPQYCQQQLQYTS
YQQNIPSNVQQNSQQQVQQSPYSQQQSQQSPLGMPFGNHLEQNPAFLKREENIQSGNQVG
FSSSQLQQSGGTSSIHNLHSGTNSSQMQQFGLASDQARQFGSSPRNMQQQHPVVQLQNAG
AELTHRHHHSRFQDQMGPAVMQGQQAAAENLPGRDGNEHYFGRNEGPGIGPHQPRLAAIP
MARSQQDTRMSGLPFPTAAPGHPSGTNFPAGPAHNLYSHGSGSLTLSNNALMGPTHIGAS
DVTNMSPVEVYRQQHEVTASGDNVPAPFMTFEATGFPPEILREIYSAGFSSPTPIQAQTW
PIALQGRDIVAIAKTGSGKTLGYLLPAFILLRQCRNNPQNGPTVLVLAPTRELATQIQDE
AIKFGRSSRVCCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKMINFRQISLLV
LDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIANDLLVNSVQVNIGRVD
VLAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLSRNLGRGFGA
AAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHR
IGRTGRAGATGVAYTFFSEQDWKFAADLIKVLEGAEQPVPPELQNMAMRGGPGFGKDRGG
MGRHDAVMGGSRWDSGGRGGMSNGGFGGRGGARDGGFGGRGGMRDGGFGGRGGIRDGPGG
RGGRGDFFSIRGRGRGFGGPPGGHVGWGRGDRGGPHNRFNGVDGRGHGRGQGRFDNRRDL
SNRSRGRSYSRSPERVRTWGYSPSRSGSRSCSSRSWSRSRSRSHSRSRSRSRSRSWARRS
RSRSRSQDNNKRPRVRNFDKKDNPPLESVGAASPDTQKNRFEEQEDARQLAPMPGSNNME
AMNPENGDTIDQTVNAGAQSNMNESE
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggaaactggggactctgctcccccttccctcggtcctcgctatgcaccggatgaccct
actcttccgaaaccttggaagggattgattgatgggagcagtggactatcatactactgg
aaccctgaaaccaacgttactcagtatgagaagccggtctctttgccaccaccattacca
cttggtcctcatcctggggtctctacttccaagcctacttcaatcccagaggctcattca
atggtgtcaaatggcacactggcacctcatgtacagcaaaatcatcatgtccttcaacaa
gatggccaattaaacaaccagctttctcaacaacctggacatctgatctcacaacagcac
aattctggtcaggttgttaatcaccatcctggcatgcaaatggcaccagacgggcgacaa
catagctcgcaatcgaaccaggtcatgccgcaacagggtgtgtttgcaatgtcatcacag
catattggcccccagcaggtgcatcaaggtcagaaaatggcacatgcaaatcaacaaatg
tctcaacatcctaacattcaacccccacaaaatccaggacaagccctacagaatccggga
caacaaatgccacagccatcagttcagcatttaggactgccaaacatacaaaatccaacc
ccattggttgggcagcctcaaggtccacaatattgtcagcagcagcttcagtataccagt
taccagcaaaacataccttcaaatgtgcagcaaaattcacagcagcaagttcaacaaagc
ccatattcacagcagcaatctcaacaaagccctttaggtatgccatttggtaaccacctc
gagcagaatccagcttttctgaagagagaggagaatatccagtcaggaaaccaagttgga
ttttcttcttcccagcttcaacaaagtggtggcacctcatccattcataacctacattct
ggaaccaattcttcgcaaatgcaacaatttggtttagcatcagatcaagcacgacaattt
ggtagctctccgcgaaatatgcaacagcaacatcccgtggttcaattgcagaatgcaggt
gctgaattgactcatcgccatcatcattctagattccaagatcaaatgggcccagctgtg
atgcaggggcagcaagctgctgctgaaaacttgccaggcagagatggaaatgaacattac
tttggcaggaatgaggggccggggattggtccacatcagccaaggcttgcagcaatacca
atggcaaggagccagcaggacacaaggatgagtggtctcccatttccaactgcggcacct
ggtcatcctagtgggacaaattttccagctggtcccgcacataatttgtacagccatgga
tctggtagtctgacactgtcaaataatgcattgatgggccctactcatattggagcttca
gatgttactaatatgtcacctgttgaagtttatcgtcaacagcatgaagtaactgcctcg
ggtgataatgttccagctccgttcatgacattcgaggctactggcttccctccggagata
ctgagagagatatattctgctggtttctcatctcctacgccaattcaagcacaaacatgg
cccattgccctgcaaggtcgggacatagttgccattgctaaaacagggtctgggaaaact
ctgggctatttgcttcctgccttcattcttctgaggcagtgccgaaataaccctcaaaat
ggaccgactgtgttggttctggctcctactagggagcttgctactcaaatacaagatgaa
gccattaaatttgggagatcttctcgggtttgttgtacgtgcttgtatggtggagcccca
aaaggtcctcaattaaaagagttagatcgaggtgctgatattgtggtggctactcctgga
cggcttaatgatatacttgaaatgaagatgatcaactttaggcaaatttcactgcttgtg
cttgatgaagctgatcggatgcttgacatgggatttgaaccccaaattaggaaaattgtg
aatgaaataccaccacgtagacaaactcttatgtatacagcaacctggcccaaggaagta
agaaaaatagcaaatgatcttctcgtcaattctgtccaggtgaatattggtagggtcgat
gtacttgctgctaacaaggctatcacacagtatgttgaagtcgttccacagatggaaaaa
cagagacggttggagcagatccttagatcccaagaacgggggtccaaggtaataattttt
tgttccacaaagaggttgtgtgatcagctttcacggaatcttgggcgtggttttggggct
gctgcaattcatggggacaaatcacagggggagcgtgattgggtattgaaccagtttcgc
agtgggaagtctcccatactagttgctactgatgttgctgctcgtgggcttgacatcaaa
gatataagagtggtgatcaactatgattttccaactggaattgaggactatgttcaccga
attggaagaactgggagggctggagcaaccggagtagcgtatacattcttctctgaacag
gattggaaatttgctgctgatttgataaaagtacttgagggggctgagcagcctgtgcct
cccgagttgcaaaatatggctatgcgtggtgggccaggttttggaaaggataggggtggg
atgggtcgtcatgatgcagttatgggtggcagtcgctgggattcaggagggcgaggtggc
atgagcaatggcgggtttggtggccgtggtggtgcaagagatggagggtttggtggccgt
ggtgggatgagagatggtgggtttggtggtcgtggtgggattagagatggtcctggtgga
cgaggtgggagaggcgatttcttttccattcggggtagaggacgcggttttggtggtcct
cctggtggtcatgttggttggggaaggggtgatcgtggtggcccacataataggttcaat
ggtgtagatggacgtggtcatggacgcggacagggtcgatttgataacagaagagacctc
agtaatagaagtagaggcagaagttacagtcgtagtcctgaaagagtccgaacatggggt
tacagcccaagtcgcagtggtagccgtagttgcagtagtagaagttggagtcggagtcga
agtcgaagtcatagtcgtagcaggagtagaagcaggagccgtagttgggctcgccgaagc
cgtagtcgtagccgtagccaggataataacaaacgaccacgtgtccgaaacttcgataaa
aaagacaacccacctctcgaatcagtaggtgcagcatctcctgacacacaaaagaaccgt
tttgaagagcaagaagatgcgaggcagcttgctccaatgcccgggagcaataatatggag
gcaatgaatccagaaaacggagatacgattgatcaaactgttaatgcaggagcccaaagt
aatatgaatgaatctgaatga
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