Cucumis melo (muskmelon): 103484522
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Entry
103484522 CDS
T03195
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03020
RNA polymerase
cmo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103484522
09124 Replication and repair
03420 Nucleotide excision repair
103484522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmo03021
]
103484522
03400 DNA repair and recombination proteins [BR:
cmo03400
]
103484522
Enzymes [BR:
cmo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103484522
Transcription machinery [BR:
cmo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
103484522
DNA repair and recombination proteins [BR:
cmo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
103484522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
103484522
NCBI-ProteinID:
XP_008439859
UniProt:
A0A1S3B0D2
LinkDB
All DBs
Position
8:1953823..1962511
Genome browser
AA seq
1199 aa
AA seq
DB search
MDDYEEYDRNMNDDDDMDQAIPDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN
TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK
AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS
EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE
SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRNEIPIIIVFRALGFVADKDILEHI
CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML
PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF
RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV
LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM
VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR
LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE
DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG
VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME
HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV
KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAARY
SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM
TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV
DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ
ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA
NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggacgactacgaagagtatgataggaatatgaatgacgacgacgacatggaccaggct
atacccgacgacgaagaagagatcacacaggaagatgcttgggcagtcatttcagcctat
tttgaagagaaagggttggtccggcagcagctcgattccttcgatgagtttattcagaat
actatgcaggaaattgtggacgagtctgcagacattgagattcgtcccgagtcacagcac
aatcctggccaccagtcggatgttgctgagacaatatacaagatcagctttggtcagata
tacttgagtaagccaatgatgaccgaatctgatggagagactgcaaccttatttcctaag
gctgcacggttgaggaatctaacatactcagcgcctttgtacgtggatgtctcaaaaaga
gtcattaagaaaggtcatgatggtgaagaagttactgaaacccaagattttacaaaagtt
tttattgggaaggttcccatcatgctccgatcgagttattgcacactgtatcaaaattct
gagaaggatctgactgagctgggggagtgtccatacgaccaaggaggatattttatcatc
aatggcagtgagaaggttcttattgcacaagagaagatgagcacaaatcatgtatatgtt
ttcaagaaaagacagcctaacaagtatgcctttgtagcagaagttcggtctatggctgag
tcacaaaatagaccacccagtaccatgtttgtacggatgctttctcgaaccagtgccaag
gggggctcttcaggacagtacatacgtgccactctgccttacattagaaatgagattcca
attataattgtgtttcgtgctctaggatttgttgctgacaaagatattctagagcatata
tgttatgacttctctgatactcaaatgatggagttgcttcggccttctctggaagaggct
tttgttatccaaaatcagcaggttgcactagactatattgggaagagaggatcaacagtt
ggtgtgaccaaggaaaagaggattaagtatgccaaggagatccttcaaaaagaaatgctt
cctcatgttggcgtaggtgaattttgtgagacgaagaaggcatattattttggttatata
attcaccggctactcttatgtgcccttggccggagagcagaagatgacagggatcactat
gggaacaaaagactggaccttgctggtcctttacttggaggcttgttcagaatgctattt
agaaagttaacaagagacgtgagaggttacgtacaaaagtgtgttgataatggaaaggac
gtcaatttgcaatttgccatcaaggcgaaaaccattactagtggcctgaaatattcactt
gccactggaaactgggggcaagcaaatgctgctggaacaagagctggagtatcacaggtg
ttaaatcgtttgacatatgcatcaactttgtctcacttacgaaggctgaattcacccatt
ggacgagaaggtaaattggccaagcctcgacagttgcataattcacaatggggaatgatg
tgtcctgctgaaacgccagaaggacaagcatgtggactggtaaaaaatcttgcattgatg
gtctatattacagttggatctgcagcataccctattttggaatttttggaagaatggggc
acagagaatttcgaggaaatttctcctgctgtcattcctcaagctacaaaaatttttgtc
aatggttgttgggttggaatccatcgagaccctgaaatgttggtgaagactttgagacgg
ctgaggagacgagttgatgtaaatactgaagttggagtagttagagatatccgtctgaaa
gaactacggatatatactgattatggccgttgcagccgtccattattcattgttgagaaa
caaaggcttctcataaagaagaaggatatccatgctcttcagcagagggaatctccagaa
gatggtggttggcacgatcttgtagcaaagggattcattgaatacatagacactgaagaa
gaggaaactaccatgatttccatgacaattagtgatcttatacaagcaaggatcaacccg
gttgaggcttattctgacacttacactcactgtgaaatccatccatcattgattttgggt
gtttgtgcttcaattattccatttcccgaccataaccagtccccacgtaacacgtatcaa
tctgccatgggtaaacaagctatgggaatttacgtcaccaactaccaatttcgaatggat
actttggcctatgttttgtattatccgcaaaaacctcttgtgactactcgagctatggag
caccttcatttcaggcagcttccagctggcattaatgcgattgttgccattgcttgctac
tctggttataaccaggaagactctgtgatcatgaatcaatcgtccattgaccgtggattt
tttaggtcacttttcttccgttcatacagagatgaggagaaaaaaatgggaactcttgta
aaagaagattttgggcggccggacaggagtaatactatgggtatgaggcatggctcctat
gataaattggatgacgatggtcttgcacccccgggtaccagagtatccggtgaggacgtt
attattggaaagactactcctatttctcaggaagaagctcagggacaagctgcacgctac
tcaagacgtgatcatagcattagtttacgtcacagtgaaaatgggattgtagatcaagtt
ctactgaccacaaatgctgatggattgagattcgtgaaagtaagggtgagatctgttcga
atacctcagattggggataaattcagcagtcgacatggtcaaaaaggaacagtgggaatg
acttacacacaagaagacatgccttggactgtggaaggaatcacccctgatattatcgtg
aatccacatgctattccttctcggatgacaattggtcagcttattgagtgtattatgggg
aaggtggcagcccacatgggaaaagaaggagatgctacaccatttactgatgtcactgtg
gataacatcagtaaggctctgcataagtgtggttatcagatgcgtgggtttgaaacaatg
tacaatggccatacaggccggcggctctcagcaatgatattccttggtccaacatactac
caaaggctgaagcatatggttgatgacaaaatacattcacgtggaaggggtcctgtgcag
atccttacgagacaacctgctgagggtcggtcacgtgatggtggtctccgatttggggag
atggagcgtgactgcatgattgcccatggtgctgctcattttctaaaggagaggttgttt
gaccaaagtgatgcttataggatccatgtctgtgagtgttgcggattgatagccattgca
aatctcaagaagagttccttcgaatgtaggggctgcaaaaacaaaaccgacatcgttcag
gtatatatcccttatgcctgtaagcttctcttccaagagcttatggctatggcaatagca
ccacgtatgttcacaaaggagatcaaaccattaaaagaccaaaagaagaaaggatcctga
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integrated database retrieval system
