Cucumis melo (muskmelon): 103484548
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Entry
103484548 CDS
T03195
Name
(RefSeq) uncharacterized protein LOC103484548
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103484548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103484548
03041 Spliceosome [BR:
cmo03041
]
103484548
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103484548
Spliceosome [BR:
cmo03041
]
Complex B
Other components
Prp19-related factors
103484548
Complex C
103484548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
ARM_TT21_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
103484548
NCBI-ProteinID:
XP_050944580
UniProt:
A0A1S3AZF7
LinkDB
All DBs
Position
8:2126235..2132821
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AA seq
913 aa
AA seq
DB search
MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARAEAPFKKRFIIYERALKALPGSY
KLWYAYLRERLDLVRNLPIIHSQYETLNNTFERALVTMHKMPRIWIMYLQTLTNQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPTHIEDLIEFL
VNSNLWQEAAENLASVLNDDQFYSIKGKTKHRLWLELCDLLTRHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRNLHEKARDIFEEGMTTVVTVRDFSVIFDSYSQFEESML
AHKMENMDLSDEEDEVQENGLEEEEEEEEDIRLDVDLSVSKFEKKILQGFWLYDDNDIDL
RLARLDHLMDRRPELANSVLLRQNPHNVEQWHRRIKLFEGNPTRQILTYTEAVRTVDPMK
AVGKPHTLWVAFAKLYEAHKDLPNARVIFDKAVQVNYKTVDNLASIWCEWAEMELRHKNF
KGALELMRRATAEPSVEVKRKVAADGNEPVQMKVHKSLRLWTFYVDLEESLGTLESTRAV
YERILDLRIATPQIIINYALLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVK
RYGKTKLERARELFEHAVETAPADSVRPLYLQYAKLEEDHGLAKRAMKVYDQATKAVPNN
EKLSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDQDVKTMCLKYAELEKSLGEIDRAR
GIYVFASQFADPRSDLNFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYL
MQKDQTLNLDEAKDKLKQAGVTEDEMAALERQLAPAIEDTSKDNSRKVGFVSAGVESQAD
GGLKVTAHQEDIELPDESDSEEDENVQIAQKEVPSAVFGGLARKKEDSDEVDGEKDDDSH
LGALERIKRQKKA
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatttcccaagatttgtatccatcacaggatgaccttctctacgaagaagagctc
cttcgaaatccttttagtttgaagttgtggtggcgctacctcatagcacgagcagaagca
ccattcaaaaagcgattcataatctacgagcgagctctcaaggccctcccgggtagctat
aagttgtggtatgcatatctgcgcgaacgcctcgatttggtacgaaatcttcccattatt
cattctcaatacgaaactcttaacaacacgtttgaacgagcgctcgtgactatgcataaa
atgccaagaatatggataatgtacctacagactttgacaaaccagaaattagtgacacga
acgcgtcggacatttgaccgagccctctgtgcccttccagtgacacaacatgatcgcatt
tgggagccatatctcgtttttgttagccaaaagggtattccaattgagacatcgcttaga
gtttatcgaaggtatttaaaatatgatcctacacatattgaagacttgatcgaatttttg
gttaattcaaatctgtggcaagaagctgcagagaatttggcttccgtgttgaacgacgat
caattttattctataaaggggaagaccaagcatcgactgtggttggagttgtgtgacttg
cttactagacatgctactgaagtttcagggttgaatgttgatgccataataaggggtggc
attaggaagttcacagatgaagtagggcgcttatggacatcacttgcagaatattacatc
agaaggaatttgcacgagaaggcaagagatatatttgaagaagggatgactactgtcgta
accgtaagagattttagtgtgatatttgattcgtactctcaattcgaggagagtatgcta
gctcataaaatggaaaatatggatttgagtgatgaagaagatgaagtacaagagaatggc
ctcgaggaggaggaggaggaggaggaggacatacgattggatgttgatttatcggtatct
aagtttgagaagaagatacttcaagggttttggctgtatgatgataatgatattgatctg
agactagctaggttagaccatctaatggacagaaggccagaattagctaatagcgttctt
ctacgacaaaatcctcacaatgtcgaacaatggcatcggaggattaaattatttgagggc
aatcccacaagacagatcttgacttatactgaggctgtgagaacagtggaccctatgaaa
gcagtaggtaagcctcacaccttgtgggttgcttttgccaagttgtatgaagcccacaaa
gatcttccaaatgcaagagttatttttgacaaagctgtacaagttaactacaagactgtg
gataacttggctagcatttggtgtgaatgggcggaaatggaattgaggcataaaaatttt
aaaggagctttggagctcatgcgtcgagctacagctgagccatctgttgaagtcaaacga
aaagtggctgctgatgggaatgaaccagtacagatgaaggtccacaagtccctaagactt
tggaccttttatgttgatctggaagaaagtcttggaaccttggagtctacccgagcagtt
tatgagcgaatacttgacttaagaattgctaccccacaaataataatcaactatgctttg
cttcttgaggaacataagtactttgaagatgcattcaaggtatatgaaaggggcgtcaag
atttttaaatatcctcatgttaaagatatatgggtcacatatctatccaaatttgtgaaa
agatatgggaagacaaaattggagcgggcaagagaactatttgagcatgcagttgaaaca
gcacccgctgattcagttaggcctttgtatcttcaatatgcaaagctcgaggaagaccat
ggtttggcaaagcgagctatgaaggtctatgatcaggcaactaaagctgttccgaataat
gagaaattgagcatgtatgaaatatacattgcccgtgcagctgagatatttggtgttcct
aaaactagagaaatctatgaacaagcaatagaatctggtcttcccgatcaagatgtgaag
actatgtgcttgaagtatgcagagctggagaagagtttgggagaaattgatcgtgctcgt
ggaatatatgtatttgcttcacagtttgcagaccctagatcagatttgaacttttggaat
aagtggcatgagtttgaggtgcaacatggaaatgaagatacttttagagagatgcttcgt
atcaaaaggagtgtttctgctagctatagccagacacattttattctgcccgagtatcta
atgcaaaaggatcagacgctgaaccttgacgaggcaaaagataaattgaagcaggctggg
gttacagaagacgagatggctgctctagagaggcagttggcccctgcaattgaagacaca
tccaaagataacagccgcaaagttggttttgtgagtgctggagttgaatcacaagctgat
ggaggactgaaggttactgctcatcaagaagacattgagttaccagatgaaagtgactcg
gaagaagatgagaacgttcaaattgctcaaaaagaagttccatctgcagttttcggaggc
cttgctcgaaagaaagaagattcggacgaggttgacggagaaaaggacgatgacagccac
cttggtgcgcttgagagaataaaacggcaaaaaaaagcataa
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