Cucumis melo (muskmelon): 103485653
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Entry
103485653 CDS
T03195
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
103485653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmo03021
]
103485653
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103485653
Transcription machinery [BR:
cmo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
103485653
RNA polymerase I system
103485653
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
103485653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOW
KOW2_Spt5
KOW6_SPT51-2
Spt5-NGN
KOW7_SPT5
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
ProQ_C
PSP1
Motif
Other DBs
NCBI-GeneID:
103485653
NCBI-ProteinID:
XP_008441561
UniProt:
A0A1S3B4G0
LinkDB
All DBs
Position
3:complement(5920260..5930265)
Genome browser
AA seq
1041 aa
AA seq
DB search
MPRRRDDDDDIDADEEEYEDEMEQPLDDDEEEEEEDRSTRKRRRSDFIDDVAEEDEDEDE
EEEDEEEEEAFGGGGRRRRAKRPSGSQFLDIEAEVDSDDDEEDDEAEDDFIVDNVADIPD
EDDNRRMHRRPLLPREDEQEDVEALERRIQARYARSNHMEYDEETTEVEQQALLPSVRDP
KLWMVKCAIGREREAAVCLMQKCIDRGPEMQIRSAVALDHLKNFIYIEADKEAHVREACK
GLRNIYAQKITLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQR
VTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRFMNIDEARELHIRVERRRDPITGEYF
ENIGGMFFKDGFLYKTVSMKSISAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKK
GHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKYFEPGNH
VKVVSGTQEGATGMVVKVDQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELH
DLVLLDNMSFGVIIRVETEAFQVLKGTPDRPEVDIVKLREIKSKIDKKISVQDRFNNTIS
SKDVVRILEGPCKGKQGPVEHIYRGILFIYDRHHLEHAGFICAKSQSCVVVGGSRTNGNR
NGNSYSRFAGIATPPRFPQSPKRFSRGGPPNDSGGRHRGGRGHHDGLVGSTVKVRQGPYK
GYRGRVVEIKGQLVRVELESQMKVVTVDRNFISDNVAISTPHRDASRYGMGSETPMHPSR
TPLHPYMTPMRDIGTTPIHDGMRTPMRDRAWNPYAPMSPSRDNWEEGNPATWGASPQYQP
GSPPSRTYEAPTPGSGWANTPGGSYSDAGTPRDSGSAYANAPSPYLPSTPGGQPMTPNSA
SYLPGTPGGQPMTPGTGGLDMMSPVIGGDTEGPWYMPDILVNYRRSGDDPIMGVIREVLP
DGSCRIGLGSSGNGETVTAPSSEVEVIVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVK
VDDTLDVKILDLVILAKLAQP
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtcgcagggacgacgacgacgacattgacgctgatgaggaagagtatgaggac
gagatggaacagcctctagacgacgacgaggaagaggaggaggaagatcgttccactagg
aagcgccggagatcagatttcatagacgacgttgcggaggaggatgaggatgaagacgaa
gaagaggaggatgaggaggaggaggaggcttttggtggcggtggtcggaggcggcgtgcc
aagagacctagcggttctcagtttttggatattgaggctgaggtcgatagcgatgacgat
gaagaggatgatgaagctgaggacgatttcatagttgacaatgtagctgatatacctgat
gaagatgataatagaaggatgcatcgccgcccattgctaccacgggaggatgaacaagag
gacgttgaagcacttgaaagaaggattcaggcgagatatgcaaggtcaaatcatatggaa
tatgacgaggaaacgacagaggtggagcagcaagcccttttaccttctgtaagggatcca
aaattgtggatggttaaatgcgcgattggccgtgaacgggaggctgctgtttgtctaatg
caaaaatgcattgataggggccctgaaatgcaaataagatctgcagtagctcttgaccat
ttgaagaactttatatatattgaagccgacaaagaagcccatgttagagaggcttgtaaa
ggtctacgcaatatatatgctcagaaaataacacttgttccaattaaagagatgactgac
gttctctctgttgaaagcaaagcaattgatctttctagagatacatgggttaggatgaag
attgggacatataagggggatcttgccaaggtggtggatgttgataatgtgcggcagagg
gttactgtgaaactgattccacggatagacttacaggctcttgctaataaattggaaggg
agagaagttgctaagaagaaggcatttgttcctccacctcgttttatgaatattgatgaa
gctagagaattacacatccgcgtagagcgtagacgtgatcccattacgggagaatacttt
gagaatattggtggcatgtttttcaaggatggtttcttatataaaacagtgtccatgaag
tcaataagtgctcaaaatataaagccgactttcgatgaacttgaaaagtttcgaaagcct
ggagaaaatggagatggggatattgctagtttgtctaccttgtttgcaaaccgaaagaaa
gggcactttatgaagggtgatgctgtcattgttgttaagggggatctcaagaatttgaaa
ggatgggttgagaaagtagaggaagaaaatgtccacatcagaccagaaatgaagggcctt
cctaaaactctcgctgtgaatgaaagagaactttgcaagtactttgagcctgggaatcat
gtaaaggttgtatcgggcactcaggagggggcaactggtatggttgtgaaggtggaccag
cacgtgcttattatactatctgatacaaccaaggaacatattcgggtatttgctgatgat
gttgttgagagctctgaggtaacaacgggtgtgacgagaattggagattatgaacttcat
gatctagtgttattggataatatgagctttggtgtaattattcgtgtagaaacggaggct
tttcaggttcttaagggtactcctgataggcctgaggttgatattgtgaaattgagggaa
ataaaaagcaagatcgacaagaaaatcagtgttcaagatcgatttaataatacaatatcc
tccaaggacgtagtgaggattcttgaaggtccttgtaagggaaaacaaggtcctgtggag
cacatatacagaggaattctgtttatttatgatcgccatcacttggaacatgcaggcttt
atatgtgctaaatcacaatcttgtgttgttgtgggtggatcccgaactaatggaaataga
aatggaaattcatactctaggtttgccggcattgcgaccccacctcgttttcctcagtct
cctaagagattttccagaggaggtccccccaatgatagtgggggaagacatagaggtggg
agagggcatcatgatgggttggttggatcaacagtaaaagttcgacaaggaccttataag
ggttatcgtgggcgtgtcgttgaaataaaaggccaactggttcgagtggagcttgaatct
caaatgaaagttgtcacagttgaccgcaattttatctcggataatgtggccatttcaacc
ccccatcgtgatgcatcaagatatggtatgggaagtgaaactccaatgcatccttctcga
actcccctgcatccatacatgacgccaatgagagatattggaacaacaccaattcatgat
ggcatgagaacacctatgcgagatcgagcttggaatccctatgcacccatgagtccgtca
agggataactgggaggaagggaatcctgcaacttggggagcgagtccacagtaccagcca
ggaagtcctccttcacgaacatatgaagctccgactcctggttctggttgggcaaatact
cctggtggcagttacagtgatgctggtaccccccgtgatagtggttcagcctatgctaat
gctccgagcccatacttgccttcaacccctggtggacagcccatgacaccaaattcagcc
tcctaccttcctggcactcccggcgggcaaccaatgacaccaggcacaggtggtctggat
atgatgtctcctgttataggtggtgataccgaagggccatggtacatgccagacatatta
gtcaattaccgtaggtcaggagatgatcccatcatgggagtaattcgtgaggtgcttccg
gatggctcgtgtaggatagggcttgggtcaagtggaaatggtgaaacggtaacagcccct
tctagtgaagtagaagtgattgttcctaggaagtcggacaagatcaagataatgggtggt
gcattgcgtggtgccactggcaagttgatcggtgtagacggtaccgacggaattgtgaag
gtagacgacactcttgatgttaagattttggatttagttattcttgctaaacttgctcaa
ccataa
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