Cucumis melo (muskmelon): 103485847
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Entry
103485847 CDS
T03195
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
cmo
Cucumis melo (muskmelon)
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmo03021
]
103485847
03036 Chromosome and associated proteins [BR:
cmo03036
]
103485847
Transcription machinery [BR:
cmo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
103485847
Chromosome and associated proteins [BR:
cmo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
103485847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
HTH_44
Tex_central_region
Spt6_S1
HHH_9
SH2
HHH_3
Tex_N
Motif
Other DBs
NCBI-GeneID:
103485847
NCBI-ProteinID:
XP_008441794
UniProt:
A0A1S3B3S8
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All DBs
Position
5:complement(17352427..17365164)
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AA seq
1572 aa
AA seq
DB search
MRLDTDDDDREPLDGDDVDGHNMGDEEDEEDEEGEDEYEKDGFIVDDVEEEDEEDVEERE
DSDDERQKKKKRKKKEEYVLDEDDYELLEDNNISIQRPKGSKKFKRLKKARRDNLEPSGF
SDDEDFVESSRGGRTAEEKLKRSLFGDDEAPLEDIAEEEEQPEEEEDADIGDEDEMADFI
VDEEEDEDGAPIRRKKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQLRKRELDTQEWR
EKRLEDEFEPIVISEKYMTEKDDQIREIDIPERMQISEESTGSPPTDDASLDDEASWIHG
HIANGMNSLFSNASGQDLSVTKDDILRYLDLVHVQKLDIPFIAMYRKEEILSLLKDIEHE
AGDDQDKNDKAPTLRWHKLLWAIQDLDKKWLLLQKRKKALQSYYKNRYLEEIRTAEHVTR
TTLNRQLFDSVNRSLEAAESEREVDDVDSKFNLHFPPGEVGVDEGQFKRPKRKSLYSICS
KAGLWEVAGKFGYSSEQFGLQLSLEKMRNDELEDPKETPEEMASNFTCAMFESPQAVLKG
ARHMAAIEISCEPCVRKHVRSYFMDYAVISTSPTPDGNVAIDSFHQFSVVKWLREKPLSR
FEDAQWLLIQKAEEEKLLNVTLKLPEKHLNKLISDFNEYYLSDGVSKSAQLWNEQRKLIL
QDALSGFLLPSMEKEARSLMTSKAKKWLLMEYGKNLWSKVSIGPYQHKENDISSDEEAAP
RVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKNDQERVLKFMTD
HQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENS
RISSDQLQGQSGIVKRAVALGRYLQNPLAMVATLCGPGREILSWKLNPLENFLTPDEKYG
MVEQVMVDVTNQVGLDTNLAISHEWLFSPLQFIAGLGPRKAASLQRSLVRAGSIFTRKDF
VTAHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYALAQELAKDVFDED
VKGDANDDEDAEMAIEHVRDRPHLLRTLDVDEYAKSKKREDKIETFLDIKRELMQGFQDW
RKQYEEPSQDEEFYMISGETEDTLAEGRIVQATVRKVLGQKAICGLESGLTGMLMKEDYA
DDSREISDLSDRLREGDIVTCKIKSIQKNRYQVFLVCKESEMRSNRHQITQNLDPYYHED
RSSLQSEQEKSRKEKELAKKHFKPRMIVHPRFQNITADEAMELLSDKDPGESIVRPSSRG
PSFLTLTLKIYDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDP
LVAHLKAMLSYRKFRRGTKAEVDELMRIEKSEYPMRIIYGFGISHEHPGTFILTYIRSTN
PHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVAAMVPMRSPATG
GSSAASAGSPWGGSSHEGGWRSQSFDRDRSSTPGSRTGRNDNRNSGGRDGHPSGLPRPYG
GRGRGRGSYNNNRGNNDRSDSGYDGSRWDSSSKDGDDGLSNFPGAKIQNSPGKEAFPGGW
SSGGSGGWWWWW
NT seq
4719 nt
NT seq
+upstream
nt +downstream
nt
atgcgactcgatactgatgacgacgatcgggaaccacttgacggtgacgatgtcgacggt
cacaacatgggggacgaggaagacgaagaagatgaagaaggagaggacgagtatgaaaag
gatggtttcatagttgatgatgttgaagaagaagatgaagaagatgtggaagagagggaa
gacagtgatgatgaaaggcagaagaagaagaaacggaagaaaaaggaggagtatgtgctc
gatgaagatgattatgaactcctcgaggacaacaatattagcattcaacggccaaaggga
agcaagaagtttaagaggcttaaaaaagctcggagagacaatttggagccatctgggttt
tcagatgatgaagattttgtggaaagcagcagaggtggacgaactgctgaggaaaaactt
aaacgtagcttgttcggtgatgatgaagctccacttgaggatattgcggaagaggaggaa
caacctgaagaggaagaagatgctgacattggagatgaggatgaaatggctgattttatt
gtagatgaagaagaagacgaagatggggctcccataaggaggaagaagttgaagaaaaaa
aagtccaggcaggcacctggtgtttcatcaactgctttgcaggaggcacatgaaattttt
ggtgatgttgatgaactccttcagcttcgcaagagagaattggatactcaagagtggcgt
gagaagagattagaagatgaatttgaaccaattgtaatttccgagaagtatatgacagaa
aaggatgaccagataagggaaattgatatacccgaaagaatgcagatttccgaggaaagt
actgggtctcctcctacggatgatgcaagtctggatgatgaagcctcgtggatacatggt
catattgcaaatggaatgaactctttgtttagcaatgccagtgggcaagacttatctgta
acaaaggacgatattctgcggtatctggatcttgtacatgtccaaaaattagatatacca
ttcattgccatgtataggaaggaggagatcctaagcttgttaaaagatatagaacatgaa
gctggtgatgatcaggataaaaacgataaagcccctacattaaggtggcataagttactt
tgggcaattcaagacttggacaaaaagtggctgcttcttcaaaagcgaaaaaaggctctt
caatcatattataaaaaccgatatttggaggagattcgtacagctgaacatgtaactaga
accacactgaatcgccagctttttgactctgtcaatcgatctcttgaggcagctgaatca
gagagagaggtagatgatgttgactctaagtttaatttgcattttcctcctggtgaagtt
ggtgttgatgaaggacaattcaaaaggcctaagaggaaatcgctgtacagtatatgtagt
aaggctggtttatgggaggttgcaggaaaatttggttatagctctgagcaatttgggttg
cagctatccttagaaaaaatgagaaatgatgagttggaggatccaaaggaaacacctgaa
gagatggcatcaaactttacctgtgcgatgtttgagagtcctcaagctgtactcaaggga
gctaggcatatggctgctattgagattagttgtgaaccttgtgtaaggaagcatgttaga
agctactttatggactatgccgtgatatcaacaagtcctacgccagatggaaatgttgca
atagattcttttcatcaattttcagttgttaagtggctccgtgaaaagccattgagtaga
tttgaggatgcacagtggcttcttattcagaaggctgaagaagaaaaacttctgaatgtc
actctcaagctacccgaaaagcatttgaataagttgataagtgactttaatgaatattat
cttagtgatggggttagcaaatctgctcagctttggaatgagcagagaaagttgatattg
caggatgcactttcgggttttcttctgccttcaatggagaaagaagcaagatccctgatg
accagtaaagctaaaaagtggttactcatggaatatgggaagaatttatggagtaaagta
tctattggtccatatcaacataaagaaaatgatattagttctgatgaagaagctgcccca
agggtaatggcatgctgctggggtcctggaaaaccagctaccacctttgtgatgttagac
tcatcaggcgaggtgcttgatgttctttacactggatctctcaccctacgttctcaaaat
gtgaatgaccagcaacggaagaaaaatgatcaagagcgagttttgaagttcatgacagac
catcaaccacatgttgtcgttttaggagctgttaatttatcttgtacacgattgaaggat
gatatttacgagatcatctttaagatggtggaggagaatcctagagacgttggacatgag
atggatggattaagcattgtatatggcgatgagtcccttcctcgtctctatgaaaattct
aggatttcctctgaccaattgcaagggcaatcaggcattgtgaagcgtgctgttgctctt
ggacgttatctgcaaaatccactggctatggttgcgacactttgtggtccaggaagggag
atcttatcttggaaacttaatcctttggagaattttttgaccccagatgaaaaatatggg
atggttgaacaggtcatggtggatgtgacaaaccaggttggcttggatactaatttggct
ataagccatgaatggttgttcagcccattgcaattcatagctggtcttggaccaaggaag
gcagcttctttacagagatccttggtgagggctggatcaattttcacacggaaggacttc
gttacagcacatggccttggtaaaaaagtatttgttaatgcagttgggttcttgcgtgtt
aggcggagtgggttggctgcaagcagtagccaatttatagatttgttggatgatacgaga
attcaccctgaatcatatgctctggcacaagagttagcaaaagatgtttttgatgaagat
gttaaaggtgatgcaaatgacgatgaggatgcagagatggccatagagcatgttagagac
cggcctcatttactgaggactcttgatgttgatgaatatgccaagagcaagaaacgggaa
gataaaatagagacttttcttgacataaaaagggaactgatgcagggttttcaggattgg
cgtaagcaatatgaagagcccagtcaggatgaagagttttacatgatatctggtgaaact
gaggacacccttgcggaggggagaattgtgcaggctacagtacgcaaggtactaggtcaa
aaagcaatttgtggacttgaatctggattgactgggatgcttatgaaagaagattatgca
gatgattctagagagatctccgacttgtctgataggttgcgtgagggggacatcgttact
tgcaagatcaaatcaattcagaagaataggtaccaggttttccttgtttgtaaggagagt
gagatgagaagtaaccggcaccagattactcagaatcttgatccctactatcatgaagat
cgaagcagccttcagagtgagcaagaaaagtctcgaaaagagaaggagcttgcaaaaaag
catttcaagccaagaatgattgttcaccctcgattccagaatataacagcagatgaagca
atggagctgttgtctgacaaggatcctggtgaaagtattgttcgacctagttctcgcgga
ccttcttttttgactttgacgcttaaaatttacgatggagtatatgctcacaaagatata
gttgaaggtggaaaggagcataaagacatcactagcttgctgcgtattgggaagaccctg
aaaattggggaggacacttttgaggatcttgatgaggtgatggatcgttatgttgatccc
ttagttgctcacttaaaggcaatgctaagctatcgcaagttcaggagaggcacaaaagca
gaagttgatgaacttatgaggattgagaagtcagagtatccaatgagaataatttatggt
ttcggaatatctcatgaacatccgggtacattcattttgacatacatacgaagtacaaat
ccacaccatgagtatattggtctctatccaaaggggtttaaatttagaaaaagaatgttt
gaagatattgataggcttgtagcgtattttcaaaggcacatcgatgatccgcaacatgat
tcagcaccatcaattagatcagttgctgctatggtaccaatgcggagccctgcaactggt
ggctcttcagcagcatctgcaggtagcccttggggtggttcatctcatgaaggtggctgg
agaagccagtcatttgacagggatcgttcttctactcctgggtctagaacagggagaaat
gacaacagaaactctggtggtcgtgatggacatccaagtggcctgcctagaccatatggt
ggacgtgggcgtggtcgaggctcatacaataataacagagggaataatgatcggtcagat
tcgggttatgatggctccagatgggattcatcttccaaggatggggatgatggattaagc
aacttcccaggagctaaaattcaaaattcaccaggcaaagaagcttttcctggtggctgg
agctctggtgggagtggggggtggtggtggtggtggtaa
DBGET
integrated database retrieval system
