Cucumis melo (muskmelon): 103485913
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Entry
103485913 CDS
T03195
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03022
Basal transcription factors
cmo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103485913
09124 Replication and repair
03420 Nucleotide excision repair
103485913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmo03021
]
103485913
03400 DNA repair and recombination proteins [BR:
cmo03400
]
103485913
Transcription machinery [BR:
cmo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
103485913
DNA repair and recombination proteins [BR:
cmo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
103485913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
103485913
NCBI-ProteinID:
XP_008441918
UniProt:
A0A1S3B4H7
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Position
5:20391434..20395995
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AA seq
295 aa
AA seq
DB search
MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSRVLAFLNSILVLNQLNEVVVI
GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL
LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC
YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSIGVDFRA
SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLSKLKRKTPE
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagctccttcgaagctctacgcagatgatgttagccttctagtggttttactg
gatacgaatccatttttctggagcacatcttctcttccgttctccaagtttctgtctcgt
gtacttgcttttctgaactccattttagtactgaaccaacttaatgaggttgtggttatt
ggtactggatacgcttcatgcaagtatttatacaactcgtcttcttactcaaatcatggc
cttgaagatggtagaatgcctgcactttgtactcgtttattgaagaatttggaggagttt
gtgattggggatgagcagtccatcaaggaagatcccaaaggagggacaatgtcttcactt
ctttctggatcgctctccatggccttgtgttatatacagaaagttttccgctctggatct
ctccatccccaaccacgaatcctttgcttgcagggatccccagatggtcctgaacaatat
gttgcaatcatgaatgccatcttttctgctcagcgttcaatggtttctatagattcatgt
tacattggttcacacaattctgcatttcttcagcaggcctcttacataacgggtggagtt
tatctgaagcctcagcaaatggatgggctgtttcagtatctcgctactgtttttggcact
gatttgcattcccggaccttcttacagcttccaaaatccattggtgttgattttcgtgca
tcgtgtttttgccataaaaaaacgatcgacatgggctatgtctgttctgtttgtttatct
atattctgcaagcatcacaagaaatgttctacctgtgggtcagtttttggtgagacacct
gtagaactcgattcattgtctaaactgaaaagaaaaactccagaatga
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