Cucumis melo (muskmelon): 103486003
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Entry
103486003 CDS
T03195
Name
(RefSeq) uncharacterized protein LOC103486003 isoform X1
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103486003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103486003
03400 DNA repair and recombination proteins [BR:
cmo03400
]
103486003
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
103486003
Messenger RNA biogenesis [BR:
cmo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
103486003
DNA repair and recombination proteins [BR:
cmo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
103486003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Utp25_C
PTEN2_C2
Motif
Other DBs
NCBI-GeneID:
103486003
NCBI-ProteinID:
XP_008442012
UniProt:
A0A1S3B5D1
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Position
8:complement(24341009..24353728)
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AA seq
520 aa
AA seq
DB search
MEAILKRYFGFSAFRPYQKEVIQGILRGKDCLVVKGTGSGKSLCYQVPPLVVGKTGIVVS
PLISLMQDQVMALKQRGIKSEYLGSSQTDYTVQDKAERGQYNILFMTPEKACSVSMSFWS
KLKKEGICLFAVDEAHCISEWGHDFRVEYKQLDKLRDVLPGLPFVALTATATEKVRSDII
NSLKMKDPQVTIGSFDRTNLFYGVRSFDRGPLFMNKLVLDISKYVASGGSTIIYCTTIKD
VEQISKALEEAGISAGIYHAQMDKESRAESHRLFIRDEVQVMVATVAFGMGIDKPNVRQV
IHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKANFYCGESLTENQRTAIMESL
MAAQQYCSIATCRRNFLLSYFGEKSESEKCGNCDNCIDSQKERDMSKEAFLLLACIQSCW
GTWGLNMYVDILRGSRAKKILNAQFDMLPLHGLGREYSSNWWKALASQLIFNGYLTENIR
DVYRTISISAKGQKFLNSVRQDCLPPLFLPVTSEMIGERK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggaggccattctaaagaggtactttggattctcggcgtttaggccgtatcagaaagaa
gtcattcaaggcattcttcgtgggaaggattgcttggtggttaagggtactggaagcggg
aaatccttatgttatcaggtaccgcctttggtagttggaaagactggcatagttgttagc
cctcttatatcattaatgcaggatcaggtaatggctttaaaacaaagagggatcaagtct
gagtaccttggaagtagtcagactgattacacagttcaagacaaggcagagaggggtcaa
tataatatattgttcatgacaccagaaaaggcatgctctgtatccatgagtttttggtca
aaattaaagaaggaaggaatttgtttgtttgccgttgatgaagcacactgcatttcagag
tgggggcatgattttagggtagaatacaaacagctggacaaacttcgcgatgttctacca
ggtcttccatttgttgcactgactgccactgcaactgaaaaggttcggagtgacattatt
aattctttgaagatgaaagacccacaagttaccattggttcattcgatcgaacaaatctt
ttttatggagtcaggtcttttgatcgtggtccattattcatgaataagctagtgcttgat
atctctaagtatgtagcctctggtggttcaactatcatttactgcacgacaattaaagat
gttgagcagatatccaaggcacttgaagaagcagggattagtgctggaatttatcacgct
caaatggacaaagaatcacgtgcagaatcccacagactatttataagggatgaagtgcaa
gtcatggttgccactgttgcttttggtatgggtattgacaaaccaaatgtaagacaggtg
atacattatggctgcccaaagagtctagaatcttattatcaggaaagtgggcgatgtggt
agagatggtattgcttctgtttgctggctttattacacgagaagtgattttgctaaagca
aacttctattgtggtgaatcactaactgaaaaccaaagaacagccattatggaatcattg
atggctgcacagcagtattgttctatcgcaacttgcagaagaaacttcttgctcagttat
tttggggaaaaatctgagtctgaaaaatgtggaaattgtgataactgcatagactcacaa
aaggagcgtgacatgtcaaaagaggcatttcttctactggcctgcatccaatcttgctgg
ggtacatggggactgaacatgtatgtggatattcttcgtggatctagagcaaaaaagata
cttaatgctcagtttgatatgcttccacttcatggacttggaagagaatactcatcaaat
tggtggaaagcactagctagtcaattaatttttaacggctatttgacagagaacatacgc
gatgtttacagaaccataagtatcagtgcaaaagggcaaaaatttctcaattctgtcaga
caggactgcctaccacctctatttttgccggtgacgagtgaaatgattggtgagagaaaa
tga
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