Cucumis melo (muskmelon): 103486004
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Entry
103486004 CDS
T03195
Name
(RefSeq) uncharacterized protein LOC103486004 isoform X1
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103486004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103486004
03400 DNA repair and recombination proteins [BR:
cmo03400
]
103486004
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
103486004
Messenger RNA biogenesis [BR:
cmo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
103486004
DNA repair and recombination proteins [BR:
cmo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
103486004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
RecQ_Zn_bind
HRDC
ResIII
Cas3-like_C_2
NPP
Motif
Other DBs
NCBI-GeneID:
103486004
NCBI-ProteinID:
XP_008442015
UniProt:
A0A1S3B4Q2
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Position
8:complement(24391674..24412094)
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AA seq
882 aa
AA seq
DB search
MEAILKSCFGFSAFRPYQKEIVQDILLGKDCLVVMSTGSGKSLCYQVPPLVVGKTGIVVS
PLLSLMQDQVMALKQKGIKSEYLGSTQTDSTVQAKAESGQYNILFMTPEKACSVPMSFWS
KLKKAGICLFAVDEAHCISEWGHDFRVEYKQLDKLRDVLPGLPFVALTATATEKVRSDII
NSLKMKDPQVTIGSFDRTNLFYGVKSFNRGPLFMNELVLDISKYVASGGSTIIYCTTIKD
VEQIFKALEEAGISVGIYHGQMDKKSRAESHRLFIRDELQVMVATIAFGMGIDKPNIRQV
IHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKADFYCGESQTENQRRAIMESL
MAAQQYCSIATCRRNFLLGYFGEKSHSDKCGNCDNCIDSKKVRDMSKEAFLLLACIQSCR
GKWGVNMPVDILRGSRAKKILDAQFDKLPLHGLGREYSSNWWKALASQLISNGYLTETIR
DVYRTIGISAKGEQFLNSARQDCQPPLVLPVTSDLIGENEDDSALTEAGKMDNLATLKSG
LSEAEEKLFQLLLEERMKLARSAGTAPYAVCGDQTVKRIALTRPSTKARLANIDGVNQHL
LKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFEAWK
MWHEDGLSIQKIANFPGRSAPIKETTVCGYIVDAVQEGYEIDWTKFCNEIGLTCRIFSNI
QSAVTKVGSAEKLKAIKDELPEEINYAHIKACLVMQSCGMSPEGLDRKTDEPMIGASLLS
GSPTSIKKKEEPCVIETPSNGEEEISVSLKRQKVRESEEERQVPVKATESLLIEWLKNND
GVTLDNMMEQFKGSEEESLVALLNSLEGDFVIYKKNNIYKLM
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggaggccattctaaagagttgctttggattctcggcgtttaggccgtatcagaaagaa
attgttcaggacattcttcttgggaaggattgcttggtggttatgtccactggaagtggg
aaatccttatgttatcaggtaccgcctttggttgttggaaagactggcatagttgttagc
ccccttctatcattaatgcaggatcaggtaatggctttaaaacaaaaagggatcaagtct
gagtaccttggaagtactcaaactgattcgacagttcaagccaaggcagagagtggtcaa
tataatatattgttcatgacaccagaaaaggcatgctctgtacccatgagtttttggtca
aaattaaagaaggcaggaatttgtttgtttgccgttgatgaagcacattgcatttcagag
tgggggcatgattttagggtagaatacaaacagctggacaaacttcgtgatgttctacca
ggtcttccatttgttgccctgactgccactgcaactgaaaaggtccggagtgacattatt
aattctttgaagatgaaagacccacaagttaccattggttcatttgatcgaacaaatctt
ttttatggagtcaagtcttttaatcgtggtccattattcatgaacgagctggtgcttgat
atctctaagtacgtagcctctggtggttcgactatcatttactgcacgacaattaaagat
gttgagcagatattcaaggcacttgaagaagcagggattagtgttggaatctatcacggt
caaatggacaaaaaatcacgtgcagaatcccacagactatttataagggatgaactgcaa
gtcatggttgccactattgcttttggtatgggcattgacaaaccaaacataagacaagtc
atacattatggctgcccaaagagtctagaatcttattaccaggaaagtgggagatgtggt
agagatggtattgcttctgtttgctggctttattacacgagaagtgattttgctaaagca
gacttctactgtggtgaatcacaaactgaaaaccaaagaagagctattatggagtcattg
atggctgcacaacagtattgctctatagcaacttgcagaagaaacttcttgctcggttat
tttggggaaaaatctcattctgataaatgtggaaattgtgataactgcatagactcaaaa
aaggtgcgtgacatgtcaaaagaagcatttcttctactggcctgcatccaatcatgcagg
ggtaaatggggagtgaacatgcctgtggatattcttcgtggatctagagcaaaaaagata
cttgatgctcagtttgataagcttccacttcatggacttggaagagaatactcatcaaat
tggtggaaagcactagctagtcaactaatttctaatggctatttgacagagaccatacgc
gatgtttacagaaccataggtatcagtgcaaaaggggaacagtttctcaattctgccaga
caggactgccaaccacctctagttttgcctgtgacgagtgatttgattggtgagaatgag
gatgacagtgcattaactgaagctgggaaaatggataacttggccactttgaagagtgga
ctttcagaggctgaggaaaaactctttcaattgcttttagaagagagaatgaagcttgct
agaagtgctggaactgccccttatgccgtatgcggtgatcaaacagttaaaagaattgca
ctgactagaccatctactaaggcaagattagcgaatattgatggtgtcaaccagcatctt
ctaaaaatgcacggagatctaattcttgaagcagtcaagcttctatcacaacaagtcagt
ctatcactggatggcgaatatagagaagaaggaaatggacaaggtactacaacgagaaaa
ctctatacagaaccaaaccaacgacgaccattggctccagcaaagtttgaagcttggaaa
atgtggcatgaagatggtctctcgatacagaaaattgctaacttccctggtaggtcggca
cctatcaaagaaactactgtttgcgggtatattgttgatgcagtccaggaaggatatgaa
atcgactggaccaaattttgtaatgagataggacttacatgtcggatattctccaacatt
caatctgctgtcacaaaagttggatctgctgagaagttgaaggcgataaaagatgaacta
ccagaagaaataaattatgcacacatcaaggcttgtctggtaatgcaaagttgtggaatg
tccccggaaggcctggatagaaaaactgacgaaccaatgattggtgcgtcattgctttca
ggaagtccaacttccattaagaagaaagaagagccttgtgtaattgaaacaccatcaaat
ggagaagaggaaatttctgtctcgttaaagcgccagaaagttcgtgaatcggaggaagaa
cgtcaagttccggtaaaagcaaccgagagcttgctaatagagtggctgaagaacaatgat
ggggtaacacttgacaatatgatggagcagtttaaaggatctgaagaagaatctctagtt
gctttgcttaattcccttgaaggtgattttgtgatatataaaaagaacaatatctataag
ctcatgtaa
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