Cucumis melo (muskmelon): 103486027
Help
Entry
103486027 CDS
T03195
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103486027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103486027
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
103486027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_15
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
TPR_CcmH_CycH
TPR_2
ANAPC16
NRDE-2
TPR_Slam
DUF1993
Motif
Other DBs
NCBI-GeneID:
103486027
NCBI-ProteinID:
XP_008442046
UniProt:
A0A1S3B5G2
LinkDB
All DBs
Position
8:complement(23583683..23616910)
Genome browser
AA seq
765 aa
AA seq
DB search
MASEGSDSKDKTTSNKLLDGLKYNVEVAESVATEAQRLPILEATPLYEQLLTVYPTAAKY
WKQYVEAHMVVNNDDATRQIFSRCLLNCLHIPLWRCYIRFIKKVNERKGMEGQEETRKAF
DFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESHRMTAVRKVYQKAIITPTHHIEQL
WRDYENFENSVSRQLAKGLVSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPKEE
LQWMSWRRLIAFEKGNPQRIDSASSNKRIIFTYEQCLMYLYHYPDVWYDYALWHASNGSI
DAAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAAKKIYESLLSDGVNATALAHIQFI
RFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMN
ESTYILEYADFLARLNDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKV
EKRRKEALSQMGEDGASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNISKNS
EKSSLPGGTGFLDTGSAGFVSHSIPSTKVVYPDTSQMVIYDPSQILGILPTATTSGLPAN
PSNPVSVASGAPTNVFDEILKATPAALIAFLANLPAVDGPTPDIDIVLSVCLESDLPTVP
LVKSGATPAQVSGGPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTT
VQSQPLPKDFFRIRQIQKARGATSSQTGSASYGSAISGDLSGSTG
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagagggatctgattcaaaggataaaacaactagcaataagcttctggatggt
ttgaagtacaatgttgaagtggccgaaagtgttgctactgaggcgcagcgtttgccaata
ttggaagcaacaccattatatgagcaacttctgacggtgtatcccactgctgctaaatat
tggaagcaatatgtcgaggcacacatggttgtaaataatgacgatgctacaagacaaata
tttagccggtgcttattgaactgtttacacatccctctttggcgttgctacatccgattc
attaagaaggtgaatgaaaggaaaggaatggaaggccaggaggaaaccagaaaagctttt
gattttatgcttagctatcttggtgttgacatatcatctggccctgtgtggatggaatac
attgccttcttaaagtcactgccggctcttagctcgcaggaggagtcacatcgtatgact
gcagtgcggaaggtctaccagaaagctattatcactcctacccatcacatcgagcaactg
tggagggactatgaaaattttgagaattctgtcagccgtcaactggccaagggactagtg
tctgaatatcaaccaaaatttaatagtgctcgagctgtctacagagagaggaagaaatac
gttgatgagattgattgcaacatgcttgctgtaccaccaactggctccccaaaggaagag
ctgcaatggatgtcatggaggaggttaatagcgtttgagaaaggaaatcctcagaggata
gacagtgcatcatccaacaaacgaattatattcacatatgaacagtgtcttatgtacctg
taccattatcctgatgtatggtacgattatgctctgtggcatgcaagtaatggatcaata
gatgctgcgattaaagtatttcagcgagctttgaaggctcttcctgactcagatatgcta
aaatatgcttacgctgaattagaagaatctcgtggatcacttcaggccgcaaagaaaata
tatgaaagccttttgagcgatggtgttaatgcgactgcactagctcatattcaatttatc
cgttttcttagaagaaatgaaggagttgaggctgctcgcaagcacttcttggatgctcgc
aaatccccgaattgcacgtatcatgtttatgttgcttatgctatgatggccttttgtctc
gacaaggatcccaagattgcacataatgtttttgaagatggaatgaagcggtttatgaat
gaatccacatatattcttgaatatgcagatttccttgctcgcttgaatgatgacagaaat
attcgggctttatttgagcgtgctttgagtaccttgcctctagaggagtctgctgaggtt
tggaaacgcttcatccattttgagcaaacttatggagacctggctagcatgctgaaggtg
gaaaaaagaagaaaggaagctctttcccaaatgggtgaagatggagcatcaacattggaa
agttcattgcaagatgttgtgtcccggtatagttttatggatctctggccgtgcacatct
agcgatctggataatttgaccagacaagagtggctcgctaagaacataagtaagaactca
gaaaaatctagtcttcctggtggaactggattcttagatactggttctgctggttttgtg
agccattcaattccatctacaaaggtcgtttatcctgatacctctcagatggtgatttat
gacccaagccaaatattaggaattcttccaactgcaacaacttcaggacttccggctaat
ccgtcaaatccagtttctgttgcaagtggagcgccgactaatgtatttgacgaaatatta
aaagcaacaccagctgcgttaatagcatttcttgcaaacttacctgctgttgatggtcca
actccagacattgatattgtactatcagtttgtctcgagagtgacctacctacagttcca
ttggtcaaatcaggggcgacaccagcacaagtttcgggtggtcctgtacctaccactagt
gacctttctggttcaagcaagtctcatgcattttccaattcctccctaaagcataccaga
gacaagcaatcaggaaagagaaaagattacgacagacaagaggacaatgaaagtacaaca
gtccaaagtcagccattgcctaaagattttttcaggataagacaaatccagaaagcaaga
ggagctacttcttcccaaacaggttctgcttcctatggaagtgctatttctggagacctc
tctggtagcactggttga
DBGET
integrated database retrieval system
