Cucumis melo (muskmelon): 103486572
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Entry
103486572 CDS
T03195
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103486572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmo03021
]
103486572
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103486572
Transcription machinery [BR:
cmo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103486572
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103486572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2_REST
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
103486572
NCBI-ProteinID:
XP_008442798
UniProt:
A0A1S3B6K6
LinkDB
All DBs
Position
4:complement(32719173..32726726)
Genome browser
AA seq
1086 aa
AA seq
DB search
MEMESSRRPFDRTREPGLKKPRLADEADRGANINGRPFPQRPVVSGNNIVQQPRFRASDR
DSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAIST
TIYANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHPSMR
HLFGTWKGVFPLQTLQIIEKELGFVPTGSSSSVAINSKPDLQAQRPTPHSIHVNPKYIER
QRLQQSGRVKGMPTDATGGSTNVSQDVAQAKISTGRPWADAPIKVLDIQRPLRDAPNDMA
QEKNVTAGYSDYEYGSDLSRTSSVGRRVVDEGRDKPWPSAGSNLSEKLSGQRNGFNIKLG
YENYSAPKSTNTGARLLPVQNFSSSSNNRVLSTNWKNSEEEEFMWGDMNSMLTGHGAPAI
NSSTGKDQWTPEDSDNSGIDNKHLSVRDTGASVDREASSDSQSSEQRELGDSGQQRSSTW
QLQESISLDGLRAGVPRKNSGQSGGYGATLTALSGTNSSVDQMGGRPQITPSNIGASGHG
FLNKGGSGPLGNVGHQRFPSRSVAFPSGQPPLHQRSPSQLLVDHVPHQIHDQKTTSFSNL
DPRKRHMQDAALGLHPSVRPDNHQKPQTHDLRALASSIPGSQPRHQFSLSESLKPDVTQS
ELSSQLAVSIPGTDFGPSSSAGTVPDRLPAEILGNPSTSSLLAAVMKSGLFSNHSITSNM
QQNLSFQDVGNMKPRSSIKPPLPNRSSPAHTFSEPKIQGESSVGPPSVESPSTMVKLSRT
KVEEPSLPSDPLPPSSPMDSASTETSHVVNDASSPISNLLSSLVAKGLISASKGESTNSV
TSQMPSQPENLKSGDAVTSSVPVPSIAVSSSCHSSTKLESPLKAAAKSSTSPPPSATTEI
NNLIGFEFSSHVIRKFHPSVISGLFDDIPYQCKICGLRLKCEEQLDTHSRWHTLRTEANN
SSTAPRRWYPCSDDWISGNARFLLDAETSLDESDLMEEDNEPMVPADEDQFACVICGELF
EDFYSQELGNWMYKGATYITIPSVGSEVGGTNEQVAKGPIVHTTCLTESSVYDVGLATDI
KMEMDV
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagctcgcggagacctttcgatcgaactagggaaccgggtttgaagaag
ccccgactcgccgatgaggctgaccgcggtgccaatattaatggccggccgtttccgcag
agaccagttgtgtccgggaataatattgtgcaacaacccagatttcgagcaagtgatagg
gattcgggaagtagtgattctggtcgaggggggtatcagcctcagccaccgcagcatcag
gagcttgtgagtcagtacaggaccgcccttgctgagctgactttcaattccaaaccaatc
atcaccaatttgaccataatcgcgggtgaaaatcttcaggctgccaaggcgatctctacc
accatttacgccaacattctcgaggttcctagcgagcagaagctaccgtcactttatcta
ctggacagtattgtaaagaatattggaagagattacataaaatactttgcagcaagactg
ccggaggtattctgcaaagcttataggcaggttgacccttctgtacatccaagtatgaga
catctttttggcacctggaaaggagtgtttcctcttcaaactctgcagattattgagaaa
gaacttggattcgtgcctactggtagttcttcttctgtggccataaactcgaagccagat
ttgcaggcacaacgtccaactccccacagtatccacgtaaatccaaagtatatagagcga
caacggcttcagcagtcaggcagggtgaaaggaatgcctactgatgctactggcggttca
acaaatgtaagtcaggatgttgctcaagctaaaattagtactggacgtccatgggcggat
gctcctattaaggtgcttgacattcagcgtccccttagagatgcaccaaatgatatggca
caagagaagaacgtcacagctggatactcagactacgaatatggttctgatctttcaagg
acatcaagtgtcggaagaagagtcgttgatgaagggcgagacaaaccttggccttcagct
ggaagcaatttgtctgagaaactatctgggcaaagaaatgggttcaatatcaagcttgga
tatgaaaattactctgcacccaagtctacaaacactggtgcacgtttactgcctgtgcaa
aatttttcgagcagcagcaacaacagagtattgtctactaactggaagaactctgaggaa
gaggagtttatgtggggtgacatgaactctatgttgacaggtcatggtgcacctgctatc
aacagtagcactggaaaagaccaatggactcctgaggattcggataattcgggtattgac
aataagcatttaagcgtacgggatactggggcaagtgttgatagagaagcttccagtgat
tctcagtcatctgagcagagagaactgggggattctggacagcaaaggtcatcaacgtgg
caactgcaggagtcaatatctctggatgggctgagagctggggttcctagaaagaattca
ggtcagtcaggaggttatggtgctactctcactgcactgtcaggtacaaactcttctgtg
gatcaaatgggaggtcgaccacagatcacaccatctaatattggggcttcaggacatggg
tttctgaataaaggaggttcagggccccttgggaatgtaggccatcaaagatttccatca
cgaagtgttgcattcccatctggacagccacccttgcaccaacgctcaccttcacaattg
ttagtggatcatgttcctcatcaaatacatgaccagaaaacaacttcattttctaatctt
gatccacgtaaaaggcatatgcaggatgctgcccttggcctgcatcccagcgttcgacca
gataatcatcaaaagccacagactcatgacctacgagctttagcttcatccatacccggg
tctcaaccaaggcaccagttctctttatctgagtcactaaaacctgatgtcacgcagtca
gaactttctagtcagcttgcagtatcaattccaggcactgattttggaccatcatcatca
gctgggacagttccagatcgattacctgcagaaattttgggaaacccaagcacaagtagt
ttgttggctgctgtaatgaagagtggacttttttccaaccattcaataaccagtaacatg
cagcagaatctcagcttccaagatgtgggaaatatgaaaccccgttcaagcattaaaccc
cctctaccaaaccggtcttctcctgcccatacattctcggagccaaagattcagggagaa
tcttcagtaggtcctccatcagttgaaagcccatcaactatggttaagttgtctcggaca
aaggtagaagaaccatcattgccgtctgatccacttccaccttcatctcctatggatagt
gcatctactgaaacttcacatgtggtaaatgatgcttctagtccaatttctaaccttttg
agctcattggttgcaaaggggcttatatctgcttcaaaaggagaatcaacaaatagcgtg
acatcccaaatgccttcacagcctgaaaatttgaagtcaggtgatgctgtgactagttct
gtaccagttccttccattgctgtttcctcttcctgtcactcatctacgaaactcgaatca
cctttaaaagctgctgctaagagctctactagtccacctccgtcggccacaactgagata
aacaacctcataggctttgagtttagttcacatgttattcgcaaatttcatccatctgtg
atcagtggactctttgacgatattccatatcaatgtaagatctgtggtcttagactgaaa
tgtgaagaacagttggatactcactcacggtggcacacattaagaactgaggcaaacaat
tcaagtacagcaccaagaagatggtatccatgttcagatgattggatttctggaaatgct
agatttctacttgatgctgaaacttctctggatgaatctgatttgatggaagaagataat
gagccaatggttcctgctgatgaagatcaatttgcatgtgttatatgtggtgaacttttt
gaagatttttatagtcaagagttgggtaattggatgtacaaaggagcaacgtatatcacc
atcccatcagtgggtagcgaggttggaggtacaaatgaacaagttgctaaaggacctatt
gtacacacaacttgtttaacggaaagttcagtatatgacgtgggactggcaactgatatt
aagatggaaatggatgtatga
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integrated database retrieval system
