Cucumis melo (muskmelon): 103486685
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Entry
103486685 CDS
T03195
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103486685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103486685
03012 Translation factors [BR:
cmo03012
]
103486685
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103486685
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103486685
Translation factors [BR:
cmo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103486685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
BEX
ATPase
Motif
Other DBs
NCBI-GeneID:
103486685
NCBI-ProteinID:
XP_008442925
UniProt:
A0A1S3B6D6
LinkDB
All DBs
Position
4:31887307..31898235
Genome browser
AA seq
1029 aa
AA seq
DB search
MSLRTFVFNNSLLYKYPFLPPRLSVLRPVISTFAMSYRPNYQGGRRGSSSGGGRGGGRRS
GGGGGGGGRGEQRWWDPVWRAERLRQKAAEMEVLNEDEWWTKMDQMKRGGEQEMIIKRSY
SRSDQEILSDMAHRQGLYFHVYNKGKTLVVSKVPLPDYRADLDERHGSTQKEIRMTTDIE
RRVGNLLDDSQGKGREHRVSSTASVEDGKQFPTSVNNIKPTSKLESDSAKEKLSAELKQK
QEAMKGSDGLKAMLAFREQLPAFNVKSGFIKAMTENQVLVVSGETGCGKTTQLPQFILEE
EISKLRGADCRIICTQPRRISAISVAARISSERGENLGETVGYQIRLEAKQSAQTRLLFC
TTGVLLRQLVQDPQLTGVSHLLVDEIHERGMNEDFLLIILRNLLPQRPDLRLILMSATIN
ADLFSKYFGNAPTLHIPGKTFAVAEFFLEDVLEKTRYNIKSEFENFEGNSRRRRRQQESK
KDPLSELFEDVDIDSQYRGYSSSTRKSLEAWSGTQLDLSLVESTIEYICRHEGNGAILVF
LTGWDDISKLLDKVKANNYLGDSGKFLVLPLHGSMPTINQREIFDRPPPGKRKIVLATNI
AESSITVDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYR
LYPKIIHDAMLQYQLPEILRTPLQELCLHIKSLQLGTVGSFLAQALQPPDPLAVQNAIEL
LKTIGALDDMEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIAAALAHRDPFIL
PINRKEEANDAKKSFAGDSCSDHVALLKAFEGWKDAKRNGAERSFCWDNFLSPVTLQMMD
DMRMQFLDLLSDIGFVNKSRGPSAYNQYSQDLEMVCAVLCAGLYPNVVQCKRRGKRTAFY
TKEVGKVDIHPGSVNAGVHIFPLPYMVYSEKVKTTSIYIRDSTNISDYALLLFGGNLVPT
NTGDGIEMLGGYLHFSASKSVLDLIKKLRGELDKLFNRKIEEPGFDINTEGKGVVAAAVE
LLHSQVVHH
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgtccctccggaccttcgtatttaacaactctctgctttacaagtacccatttcttccg
cctcgactctctgtacttcggccagttatttcaacattcgcaatgtcatatcggccgaac
tatcaaggtggccgtcgtgggagttcctctggaggaggacgcggcggtggtcgacgaagc
ggaggtggaggtggcggcggcggtagaggagagcaacgttggtgggacccggtctggcgt
gctgagcgtctgcgacaaaaggctgccgagatggaggttcttaatgaagacgaatggtgg
acaaagatggaccagatgaaaagaggaggggaacaggagatgataattaagcgtagttat
agtcgaagtgaccaagaaatcctttctgacatggctcatcgacagggtctttacttccat
gtgtataataaggggaagacccttgtggttagtaaagttccattgccagattaccgggct
gatctcgatgaacgccatggatctacacaaaaagagattcgaatgactaccgatatagag
aggagagttggaaatcttttggatgattcacagggtaagggaagggagcacagggtttct
tctactgcatcagttgaagatggcaaacagtttccaacttctgtaaataacataaaacct
accagcaagttggagagtgattcagcgaaggagaaacttagtgctgaacttaagcagaaa
caggaagcgatgaaaggaagcgatggcttaaaagcaatgttggcatttagagaacagctt
ccggcattcaatgtaaaatctggatttataaaagcaatgacagaaaaccaggtattggtt
gtttcaggagagacaggttgtggtaaaaccacacagctccctcaatttattttagaagag
gagatatcaaaacttcgtggtgctgactgcagaataatatgcacccaacctcggcgtatc
tctgctatttcagttgctgctcgtatatcctctgaaagaggagaaaatcttggtgaaaca
gttggatatcaaatacgattggaagcaaaacaatcagctcagactcgactactattttgc
accactggagttctactccggcagttggttcaggacccacaattgactggtgttagccat
ttgcttgtggatgaaatacatgaaagaggcatgaatgaagactttttattaataattctg
cgcaaccttcttcctcagcggccagatttacgtcttattttaatgagtgccaccatcaat
gcagacttgttctccaaatactttggaaatgccccgacgctacacataccaggaaaaaca
tttgctgtggcagagttctttctagaggatgtgctggagaaaactcgttataatatcaag
tcagagtttgaaaactttgaaggaaattcaaggagaagaaggagacaacaagaatctaag
aaggaccctttatcagaattatttgaggatgttgatattgattctcagtacagaggttat
agttcatctacgagaaagtcacttgaagcctggtctggaacacaacttgatttgagtctg
gtggaatcaactattgagtatatttgtcgccatgaaggcaatggtgctatcctcgtattc
ctaaccggctgggatgacatttctaaactactcgacaaagtcaaagcaaacaattatctt
ggggattctggaaagttcttagtacttcctttgcacggttccatgccaaccattaatcag
cgggaaatatttgataggcccccccctgggaaacgaaaaattgtgctggcaactaatatt
gctgagagtagtatcaccgtagatgacgttgtctatgtcattgattgtggaaaagcaaag
gagacgagttatgatgctttaaacaaacttgcttgtttgctgccttcatggatttccaag
gcttcagcacaccagaggcgaggtcgtgctggtcgtgtgcaacctggtgtttgttataga
ctctatccaaaaattatccacgatgcaatgcttcagtatcagttacctgaaattttaaga
actcctctacaagaactttgtttgcatatcaaaagtttgcagctaggaactgttggttcc
tttttggcacaggcattacaaccaccagatcctcttgcagtccaaaacgccattgaactt
ctcaaaacaattggtgctttagatgatatggaggagcttaccccactgggtcgtcatctt
tgcaccttacctctggacccaaatatagggaagatgcttctcatgggttctatatttcaa
tgcctgaatcctgccttgaccattgctgctgctctggctcaccgagatccatttattttg
cccattaataggaaagaggaagcaaatgatgcaaagaaatcatttgctggtgactcttgc
agtgatcacgttgctcttcttaaagcctttgaaggatggaaggatgcaaaaagaaatgga
gctgaaagatcgttctgttgggataactttttatctccagtaaccttgcagatgatggat
gacatgagaatgcagtttttagatctattatctgatattggctttgtgaacaagtccagg
ggtccaagtgcatacaaccagtacagccaagatttggagatggtgtgtgcggtgctttgt
gctggactatatcctaatgtcgtacaatgtaaaagaagaggaaagaggacagccttctat
actaaggaagttgggaaagttgatattcatcccggatctgtgaatgcaggggttcatatc
ttccctttgccttacatggtttacagtgagaaggtcaaaaccactagtatatacattaga
gactctaccaatatatcggactatgccttgttgttgttcggtggtaatcttgtacctacc
aacactggagatggcattgaaatgcttggtggctaccttcatttctctgcatcgaagagc
gttttagatttaataaagaaactgcgcggtgaactagacaagctttttaatagaaagatt
gaggagccgggtttcgacattaatactgaaggaaaaggagtggtggcagctgcagttgag
ttactgcacagtcaagttgtacatcactga
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integrated database retrieval system
