Cucumis melo (muskmelon): 103487108
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Entry
103487108 CDS
T03195
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103487108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmo03041
]
103487108
03009 Ribosome biogenesis [BR:
cmo03009
]
103487108
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103487108
Spliceosome [BR:
cmo03041
]
Complex A
U1 snRNP components
U1 related factors
103487108
Complex B
103487108
Ribosome biogenesis [BR:
cmo03009
]
Eukaryotic type
Pre-60S particles
Helicases
103487108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103487108
NCBI-ProteinID:
XP_008443543
UniProt:
A0A1S3B7U1
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All DBs
Position
4:complement(28152479..28158618)
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AA seq
778 aa
AA seq
DB search
MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGIHGAP
STGHGGAPLKGHKPSDAGSGLSADSYRQRHEITFSGDNVPAPFSSFEVTGFPPEILREVH
NAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNDPKLGPTVL
VLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGVDIVVATPGRLNDI
LEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAS
DLLVNPIQVNIGNVDELVANKSITQHIEPLAPLEKHRRLEQILRSQEPGSKVIIFCSTKK
MCDQLARNLTRQFGAAAIHGDKSQGERDHVLGQFRTGRTPVLVATDVAARGLDIKDIRVV
INYDFPSGVEDYVHRIGRTGRAGATGIAYTFFGEQDAKYASDLIKILEGANQRVPPELRD
MASRSYGMAKFRRWGSGSDGRDGGRGGRNDSNSGGRGGRGMSSFSSSKPERGGGRGYDFD
SRDRYDSGYNRGRSRSPPRGGAGGDRTKSWNRDHSPPGWSPDRSAPARDRSPVRSFHQSM
MERSNIPPRGIENASKNGSGSWNQVRSRSRSRSRSPNRFNRAPPARERSPILSFHKTVLD
KGNSGGTHDNLDNKDSRRSPRDRTDGGGYEKSSRSSYPREEDEEGMIPQDEQGKGASD
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggcggctactgctactgctgtttctgttggtccacgatatgcaccagaagatccaaca
cttcccaaaccatggagaggtttagttgatgggaaaacagggtatctttacttctggaat
ccggaaactaatgtcacccaatacgagagacctgtggctgctgctcctcttaattcatca
atagtgtccataagttcttccgttcaaattcaaaagccatcctcgggccactcttataat
aataatttgaatgaaaataacgataagtacggaagaggttcccatgcacccaaacaagag
gttgcaaggggtgaaacctttcaatcacatgatacctcaaatggaatacacggagcacct
agtactgggcatggaggagcaccattgaaaggacacaaaccatcagatgcaggaagtggt
ttatctgccgactcttatcgtcaacgacatgaaataactttttcgggagataatgtgccg
gcaccattttcatcatttgaagtcactggtttcccacctgagattcttagggaggtacat
aatgcagggttctctgctccaactccaattcaggcgcagtcatggccaattgctcttcaa
agtagagatattgtagctattgctaaaacaggctcagggaaaactcttgggtacttaata
ccaggttttattcatctcaagcgcattcgaaacgatcctaagctaggtccgactgttttg
gtgttgtcacccacaagggaattggcaacacagattcaagatgaagctgtgaagtttggg
aagtcatcgagaatctcttgcgcgtgtctatatggaggagcaccgaagggcccacaattg
agggatatagaccgtggagtagatattgtagttgcaactcctggtcgtttgaatgatatt
cttgagatgaggagaatcagtctgcatcaggtttcttatcttgtactagatgaggcagat
cgcatgctggacatgggtttcgaaccccagattagaaagattgtaaaggaggtacctgct
cgccggcagactttaatgtacacagctacttggccaaaagaagttcgaaaaattgcatca
gatctgcttgttaatcctattcaagtcaatatcggcaatgtcgacgagcttgttgccaac
aagtccatcactcagcatattgaaccattagcaccattggagaagcacaggcgattggag
cagatattgagatctcaagaacctggatcaaaagtgataattttctgttctacaaagaaa
atgtgtgatcagcttgctcgcaatcttacacgccaatttggagctgcagcaattcatgga
gacaaatcccagggtgagagagatcacgttcttggtcaatttcgcacaggaaggactcct
gtgcttgtagctactgatgtggcagctcgaggattggatattaaagacatcagggttgtt
atcaactatgatttcccatccggagtggaggattatgtccataggattggtcgaactgga
agagcaggtgctaccggcattgcttacacatttttcggtgagcaggatgcgaagtatgct
tcagatctgatcaaaattttggagggagctaaccagcgagtcccaccagaacttcgtgat
atggcttctcgaagttatggaatggccaagtttagacgttggggttctggctctgatggt
cgtgatggtggtcgaggtgggcgcaatgattcaaactctggtgggaggggtggacgggga
atgtcttccttttcttcctccaagccagaacgaggtggtggccgagggtatgacttcgac
tcacgagataggtatgattctggatacaatcgtggtcgcagtcggagtcctccaaggggt
ggtgcaggaggtgaccgaaccaaaagttggaaccgtgaccacagtcctccaggctggagc
cccgacaggtctgcaccagcacgtgatcgctctccagttcgtagttttcaccaatccatg
atggaacgtagcaacattccacctcgaggaattgaaaatgctagtaagaatggttctgga
agctggaaccaagtccgaagtcggagccgtagccgaagccgtagtcctaaccgttttaac
cgggctcctccagcacgagagcgttctccaattttgagtttccataaaacagtgttggac
aagggaaactctggaggcacacatgacaacctagataacaaggattcaagaagatcacct
cgtgatagaactgacgggggaggatacgaaaagagttctcgctcctcatatcctcgagaa
gaagacgaggaaggcatgatcccgcaagatgaacaaggtaagggagcatcagactga
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