Cucumis melo (muskmelon): 103487115
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Entry
103487115 CDS
T03195
Name
(RefSeq) zinc finger CCCH domain-containing protein 41 isoform X1
KO
K13192
RNA-binding protein 26
Organism
cmo
Cucumis melo (muskmelon)
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cmo01009
]
103487115
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103487115
03041 Spliceosome [BR:
cmo03041
]
103487115
Protein phosphatases and associated proteins [BR:
cmo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
103487115
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
103487115
Spliceosome [BR:
cmo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
103487115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
zf_CCCH_4
DUF4615
RRM_PARP14_3
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
103487115
NCBI-ProteinID:
XP_008443556
UniProt:
A0A1S3B8B1
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All DBs
Position
4:complement(28069018..28081022)
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AA seq
901 aa
AA seq
DB search
MELKVSYPKPGISSSDYVSDPEEKDISDDEDDDRNHKHRRRETRSQSLERDTREHVLRPY
GKRNKPFENGRSFRDNDSQANEAWKSFNAPTLEKDTPGKFDKRRLGGVPGPRVVGDFNQR
IRGNQGFSGDLSSGRGRGRDSGAWNQFDSRFSPVDIASQIVHHGSFPPSLFAGRGLPSVS
TAQTAPWNAFGLIPGIPTSGLETMHPIGLQGTLRPPINPPLNIGIPRQRCRDFEERGFCL
RGDMCPMEHGINRIVVEDVQSLSQFNLPLSLPNAHLIGKTTGSLPAVSTSSTTVMSGKGL
LGKNIKPSVGDDSLPFHGVYSGSGSAAEADLYDPDQPLWNNSCPEKPNALSGMHSSKIDE
VESFMGDDPSDRNQVRKCDAGDNGCTSRITAPSGSQVTSSSVWGRVGSRNRQDVKGKLDP
VNASGCLDNEVKEQNVVLASVQGNSHQQKHMAQDDPHNKAGDLSLKAQSDANTMRTMRKP
SQKATCTLFVNGIPLQSNKTETLLSHFNKYGEVIDIYIPANSQRAFVQFSKREEAEAALK
SPDAVMGNRFIKLWWANRDSIPDDGVSSNNGIHVPPRHIAAASLPSIAVKGKNSVPVSTS
KGSISHPLDSSLAAPDHSHAFSSPKVSSPLQKKLENLEQLKEELRKKQQMLDMKRNDFRR
QLDKLEKQATGNKAEAVTGSSAKRLKVGIEADTSKLGPKASDSSVALASPHTEVNGEHPE
PTTSIVQQESSKFEPVDSLTTEAPFDNEGEKLGSCSTGFKIVPPLPADFANEDVIKQHFS
ALGDVCTVELVSEDGVRISNASNNCSANVTFLTRHSAERAFVDGRSWQGQDLKFIWLSSD
KDPHRTSSDTSRDADMEPENEAEIISLNETPCHKESQSPTQDDSDEPLETGKVSAVIERE
T
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggaacttaaagtttcatatcctaagccaggtatttcttcttctgattatgttagtgac
ccggaggagaaggatattagtgatgatgaagatgatgatcgcaaccataagcatcggagg
cgggagacacgctctcagtctttggaaagagatacacgtgagcatgttttgaggccatat
ggaaagcgtaataaaccatttgaaaatggacgtagttttagggacaacgattctcaagcc
aatgaagcttggaaatccttcaatgctcccactctcgagaaagacactcctgggaaattt
gataaaagacgcttgggtggagtgccaggacctcgagtggttggggatttcaatcaaagg
attaggggaaaccagggattttcgggtgaccttagttctggtaggggaagaggaagggat
tctggcgcttggaaccaatttgattcaaggtttagtcctgtagatattgcttcccaaatt
gttcaccatgggtcttttcctcctagtctatttgctggaaggggtttacctagtgtttct
acggcacagactgcaccttggaatgcatttgggttaataccaggaattccaaccagtggg
ctagaaacgatgcaccccattggcttgcagggaacacttagacctccgatcaaccctcct
ctaaacataggcattcctcgccagagatgtagagattttgaggaacgaggattctgcctt
agaggagacatgtgccctatggagcatggtattaaccgcattgtagttgaagatgtccag
agtctttctcaatttaaccttcctctatcgcttccaaatgcacacctaattgggaaaact
actggatctctgcctgcagttagcacatcttccacgacagtaatgagtggcaaaggattg
cttggaaaaaatatcaagcctagtgtaggagatgattcattgccctttcatggtgtatat
tcaggttctggtagtgcagctgaagctgacttgtatgatcctgatcaacctctatggaac
aacagttgtcctgagaaaccaaatgcactctcaggcatgcactcatcaaagatcgatgaa
gttgagtcctttatgggagacgatccttctgataggaatcaggttaggaaatgtgatgcc
ggtgataatggatgcactagtagaattactgcacctagtggttcacaggttactagttcg
tccgtctggggtagagttgggtcaaggaatagacaagatgtgaaagggaaacttgatcca
gtaaatgcctctggttgtcttgacaatgaagtgaaagaacagaatgtggtattggctagt
gttcaaggaaattctcatcaacaaaagcacatggctcaggatgacccccacaataaagca
ggagatttatctctcaaggcgcagagtgatgccaataccatgcgtactatgcgaaaacca
tctcagaaagcaacgtgtactctgtttgtcaatgggattcctctacagagcaacaaaaca
gagacacttctgtctcattttaacaaatacggtgaggtcattgacatctatattccagca
aatagccaacgcgcttttgttcagttctcaaaaagggaagaggcggaagctgctctaaaa
tcacctgatgctgttatgggcaatcgttttatcaaactttggtgggctaatcgtgacagc
attcctgatgatggtgtaagcagtaataatggtattcatgttcctccacgtcatattgca
gccgcttcacttccatctattgctgtcaaaggaaagaacagtgtcccggtttccacttca
aaaggcagtatttcccacccactggattcttctttagctgccccagatcactctcatgct
ttcagtagccccaaggtttcttctcctttgcaaaagaaattagagaatctggaacagtta
aaagaggaactccggaagaagcaacaaatgctagatatgaagcggaatgattttaggcgc
cagttagataaacttgaaaaacaggccacaggaaacaaagctgaagcagtcactgggtcc
tctgcaaagagacttaaagtgggaatagaagctgacactagtaaacttggaccaaaggcc
agcgattctagtgttgctttggcatcaccacatacggaggtgaatggggagcatcctgag
ccaaccacatctattgtacaacaggagtcctcaaagtttgagcctgttgattcattgaca
accgaagcaccttttgataatgaaggagagaaattgggtagctgttcaactggatttaaa
attgttcctcctttaccagcggactttgccaatgaggacgtgataaagcaacatttctcg
gcgttgggtgatgtttgtactgtggagcttgtttccgaagatggtgttcggatttcaaat
gcatccaataactgctcagctaatgtcacttttttaacccgtcattcagctgaaagggca
tttgtagatggcagatcctggcaaggtcaagacttaaagtttatatggctgtctagtgac
aaagaccctcatcgcacttcttcggacacatcacgagatgcagacatggagcctgaaaac
gaagcagaaatcatttctttaaacgaaaccccatgtcacaaagaatcccaaagtccaaca
caagatgacagcgacgagcctttggaaacaggtaaggtttcggcagtgatagaaagagag
acatga
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