Cucumis melo (muskmelon): 103487357
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Entry
103487357 CDS
T03195
Name
(RefSeq) pre-mRNA-processing factor 39-2 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
cmo
Cucumis melo (muskmelon)
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmo03041
]
103487357
Spliceosome [BR:
cmo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
103487357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
Motif
Other DBs
NCBI-GeneID:
103487357
NCBI-ProteinID:
XP_008443873
UniProt:
A0A1S3B9U5
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All DBs
Position
12:22730210..22749536
Genome browser
AA seq
1085 aa
AA seq
DB search
METRLVIPTPTSGTSIWSLLRSVQFYAKSIALAMANDFQLLNNSGTKAQPIESDSAVGLD
ESKLYEGVPIHGLDFDEWTSLISEIEREYPDVIEKISLVYDSFLSEFPLCHGYWRKYAAH
KTRLCSADRVVDVFEQAVQSATYSVGIWVDYCSFSISAFEDPSDIRRLFKRAISFVGKDY
LSYSLWDKYIEFEVSQQQWDSLALIYIQTLRFPTKKLSYYHNSFRKLTASLKENIQSDTG
CNNSMPMEFEASPDGEVPTKCTDTELSSVIKDLLDLSAGTTRYSSLLKYVHAGEKLYDEA
CQLEEKVIHFEDKIRRTYFHVKPLDAGQLKNWHSYLDFVEMYGDFDWAVKLYERCLIPCA
SYPEFWMRYVEFVETKGGREIAMFALERATKTFLKKVPVIHLFNSRFKEQIRDLSGARAA
FLQLDGDLDSKFVENIILKANMEKRMGKSTEAFNIYREALEMALMKKKLDVLPALYVHLS
RLKHMITGSVDAAMEVLIDGIRNVPLCKLLLEELINFVMVYGVPKLINLVDPIVANAISL
KADVSQGWSEQDREDISTLYLKAVDLCGTIHDVMKVWNRHIKLFPQSIRVMPYKDPIQET
EAIKMTVGGKQTTDTTVTYQPIRDGHVNPSNQPPLEENKQSLLDNQNFKNDQSSNGNEPT
SCLLVKRNIATKESTIDQINLGDSEIGAEEREQENSPKVLEHYGSGGNQIESAQMRTPMD
NSKKDECGDALGVTLKNLSIGSLSLNAKNNDKINLLSEACHEGEPPLENSLSSESVNNTD
EEVVMHNPLSVGSSGSIQISNEVVSPSSSPSPDKPTHTQVHSQFHMHQTGDRKWHHKRYA
GNLRHDPQHHFQGHSRRRPHRTWKDSPQDYRGMRSGQTPGDQDYTSESIASQKPQVERIS
QDNNHIQSGQQQNFHTTSQSQLPSQGFTQEKSQYTTSNDEQYGHMQSGQAPNTYEQMWQY
YYYQQQQQYLLQQQQLQQAQNFQQQYYQQQVQMQQQYFQSQQQYPYQPVELQQQYHIQQQ
LQQTQQQQQLLGLQPQEASQTDQLSFQQHEHQPEELEEAEQKQHTKQVSSLSIQIQAGER
DHQDS
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggagacccgtcttgttattccgactcctacatcgggaacttccatctggtcattgcta
cgttcagtccagttctatgccaaatcaatagctcttgctatggcgaatgattttcaactt
ctcaataattcaggcacaaaagctcaaccaattgaatcagactccgcagttggcttagat
gagtccaaactttacgaaggtgttcccatacatggactagattttgacgaatggacttcc
cttatttcagagattgagagagagtatcctgatgtcattgagaagatctctttggtgtat
gactcattcttgtccgagtttcctctgtgccatggatactggagaaagtatgcagctcac
aagacaaggttgtgctctgcggacagggttgttgatgtattcgaacaagcagtgcaatca
gcaacttattctgttggtatttgggttgattactgtagtttcagcatatcagcttttgaa
gatccatctgatattcgaagattgtttaagagggcaatctcctttgtcggaaaggactat
ttgagctatagcttgtgggacaagtacattgagtttgaggtatctcaacagcagtgggac
tccttagctcttatttacattcaaactctgagatttcctaccaaaaagttgtcttattat
cacaacagctttagaaaattgactgcttctctgaaagagaatatccaatctgatactggt
tgcaataattcaatgcccatggaatttgaagcttctccggatggtgaagtcccaactaag
tgtacggacactgaactgtcttctgtcattaaagaccttctggatctgtctgctggcaca
actaggtatagttcactactgaagtacgtgcatgctggtgaaaaactctatgacgaagca
tgtcaactagaagaaaaagttattcactttgaggataagatcaggaggacatattttcat
gtaaaaccccttgatgctggtcaactgaagaattggcattcttatcttgactttgtggag
atgtatggagattttgattgggcggttaaactctacgaaagatgcttaattccctgtgct
agttatcctgagttttggatgcgctatgtggagtttgtcgaaactaagggtggaagagag
atagcaatgtttgctctagagcgtgcaacaaaaacttttctcaagaaagttcctgttatc
catcttttcaattcaaggtttaaggaacaaataagagatttatcgggtgcacgtgctgct
tttcttcagcttgatggagatttagattctaagtttgtggagaatatcatattgaaggct
aatatggagaaacgaatgggaaaatctacagaagcttttaatatttaccgagaagccctg
gagatggctttgatgaagaagaaattggatgttctaccagctctgtatgtacatctttct
cgacttaaacacatgattacaggaagtgttgatgctgctatggaggtcttaatagatggg
atccgaaatgtacctctctgcaaattgcttcttgaggaacttataaacttcgtaatggtc
tatggagtgccaaagcttataaatttagttgatcccatcgtagctaatgcaatatctctc
aaggcagacgtatctcagggttggagtgagcaagacagagaggatatttcaactctgtat
ttaaaggctgttgacttgtgtggaaccatccatgatgtaatgaaggtgtggaatcggcat
attaaattgtttccacagtctattagagtaatgccatataaagaccccatccaggagaca
gaagccataaaaatgaccgtgggaggaaaacaaacaacagataccactgtaacctaccaa
ccaatcagagatggccatgtcaatccatcaaatcagcctcctctagaagaaaataaacag
tctctgttagataaccaaaacttcaagaatgaccaatcttccaatgggaatgaaccaaca
tcctgtttactcgtaaagcgtaatattgctacgaaagagtctaccatcgaccagattaat
ttaggagattctgaaattggtgcagaggaaagggagcaggaaaattctccaaaagttctt
gagcattatggaagtggtggaaatcagattgaatcggcacaaatgcgaacgcccatggac
aactccaaaaaagatgagtgtggtgatgctttgggcgtgaccttgaaaaatctttcaatt
gggagtctttccttgaacgcaaagaacaatgacaaaataaatttactttccgaagcatgt
cacgaaggggaacctcccctggagaacagtttgtctagtgaaagtgtcaacaatacagat
gaagaggttgtaatgcacaaccctctaagtgtcggatcttccggttccatccagatttcc
aatgaagtggtcagtccatcatcctctccaagtcccgacaagcctacacacacccaagta
cattcgcagtttcacatgcatcaaactggggacagaaaatggcaccataaacgttatgcc
ggtaacttgcgtcatgacccccagcatcattttcaaggacactctcgaagaaggcctcat
cgaacatggaaagattctcctcaggactaccgaggaatgcgatctggtcaaacaccaggt
gatcaagattatacctctgaatctattgcttcacaaaaaccacaagttgaacgaatcagc
caagacaacaatcatattcaatctgggcagcagcagaatttccatactacttctcagtct
caacttccttctcaaggttttactcaagagaaatctcaatatactacatcaaatgacgaa
caatatggtcacatgcagagtggtcaggcgccaaatacctatgaacagatgtggcaatat
tattactatcagcaacagcagcagtatcttttgcagcagcaacaacttcaacaggcacag
aattttcagcaacagtattaccagcagcaagtgcaaatgcaacaacagtattttcaatcg
caacaacaatatccttaccagcctgtggaattacaacagcagtatcacattcagcagcaa
ttgcaacaaacgcagcagcagcaacagttacttggtcttcagccgcaagaagcctcccag
acagatcagctatcattccaacaacatgagcatcagccagaagaactggaggaagctgaa
caaaagcaacacacaaaacaagtttcttcgttgtctattcagatccaggctggtgaacgt
gaccatcaggattcttga
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