Cucumis melo (muskmelon): 103487375
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Entry
103487375 CDS
T03195
Name
(RefSeq) dicer-like protein 4 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cmo
Cucumis melo (muskmelon)
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cmo03036
]
103487375
Chromosome and associated proteins [BR:
cmo03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
103487375
microRNA pathway
RISC loading complex
103487375
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
DND1_DSRM
dsrm
PAZ
Cas3-like_C_2
IstB_IS21
DUF930
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
103487375
NCBI-ProteinID:
XP_008443888
UniProt:
A0A1S3B9W6
LinkDB
All DBs
Position
2:complement(14055254..14073546)
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AA seq
1652 aa
AA seq
DB search
MMPDGETNSTTEVSENFRPTSFVPVERLMGPSLMNDRDAGSSTSTSEKDPRRIARKYQLE
LCKKALEENIIVYLGTGCGKTHIAILLIYELRHLIRRSQNGICVFLAPTVALVQQQAKVI
EDSIDFKVRVYCGGSKSLNSHYDWEREMEEYEVFVMTPEIFLRNLYHCYIKMDCVELLIF
DECHHAQVKSDHSYAEIMRVFYKTDDPKRPRIFGMTASPVVGKGACNQQNLSRSINSLEK
LLDAKVYSVEDREELHAFVSSPIVNIYYYGPVANGSSSSFMSYCSRLEDVKRKCIVALGQ
VEGEHEVLLATKKLLFRMHENILFCLESLGVWGAWQASKILLSGDNSERSELIEEAERNP
RNDSLSDRYLNQAAEIFASGCKEDGGISDMLNVDFLEEPFFSKKLLRLIGILSSFRQQLN
MKCIIFVNRIVIARSLSYILQNLKFLAYWKCDFLVGVHSKLRSMSRKTMNHILTKFRSGE
LNLLIATKVGEEGLDIQTCCLVIRFDLPETVSSFIQSRGRARMPQSEYAFLVDSGNEKEL
GLINEFRKDENRMNREISSRSSNETFHSHEESIYRVASTGASITSGRSISLLHEYCSKLP
HDEYFDPKPKFFYFDDLGGTVCHVNLPSNAPIPQVVSSPQSSRDAAKKDACLKAVEELHK
LGALSDYLLPMRGRGSANEQESELNSSDSDSSEDERSRRELHEMIFPAALKESWTGSGYL
VLYCYHIKCTPDPRDRNYKEFGLFVKAPLPQEAERMDLELHLARGRSVMVNLMPSGVVEL
LEEEITQAESFQEMFLKVILDRSEFVQEYIALRNNSSRSVSSTSYLLLPMIFHDNEGSLF
IDWNVIRRCLSSQIFQNHACSIVKGTASSDTHLMLYDGRRSSSDIENSLVYVPYKGEFFF
VTNIERGKNGHSQYKNSGFSSHFEHLKTKFGIHLNHPEQPLLRAKPLFLLHNLLHNRKRE
DSEAHHLEEYFIDLPPEVCQLKIIGFSKDIGSSISLLPSIMHRLENLLVAIELKCRLAAA
FPAGAEVTANRILEALTTEKCQERISLERLEILGDSFLKFVVARYLFLTHDKFDEGELTR
RRSYLVKNFNLLKLATRKNLQVYIRDQPFEPSQFYLLGRPCPRICNEETRKDIHSHDEAR
NNGKVNETKCSKGHHWLQKKTISDVVEALVGAFLVDSGFKAAIAFLKWIGIRVEFEASLV
TNALMASNGYVLLADSIDISALQNSLGHQFLHKGLLLQALIHPSYHKHGGGCYQRLEFLG
DAVLDYLITSYLYSAYPKLKPGQLTDLRSVFVRNEAFANVAVDRFFYKFLLCDSTSLLSD
IKSYVHFIKAPPSERDSREQPRCPKALGDLVESSVGAVLVDTGFDMNCVWKIMLSFMDPI
MNFSGFQLSPIRDITEFCQNCGWKLKFNSSKMEGYYSVKAEVKGGNFHAAASAANRRKKD
AEKIAANLILTKLKAKGFIPEVNSLEEILKSSKKMEPKLIGYDETPSVMIDQVDNGLRTS
NVPEFSSENSDPRMHYEVDNSHPVRITRISKMLVSSSRTAGEQLKLAFEGHDSPTDLQSS
SGRSGKTTARSRLYEICAANHWNRPSFDCMNEEGPSHLKMFTYKVGLEIEETPDTIFEFF
GAPHLKKKAAAEHAAEAALWYLKKGGYLAGTD
NT seq
4959 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgatggcgagaccaattctacgactgaggtcagcgaaaattttcgacccact
agttttgtgccggtcgagagattaatgggtccgtctctgatgaatgatcgggatgcgggt
tcaagtacaagtacatcagagaaagatcccaggagaatcgcaaggaaatatcaattggag
ctgtgcaagaaagctttggaagagaatatcattgtgtatctcgggacaggctgcggcaag
actcacattgctatactcctgatatacgagttgaggcacttaatcaggaggtcccagaat
ggtatctgtgtgtttctggctcctacagttgctttagttcaacagcaagcaaaagttata
gaagactccatagatttcaaagtcagggtctactgtggaggttccaaaagcttgaatagt
cattatgactgggaaagagagatggaagaatatgaggtttttgtcatgacccctgaaata
tttctgcgtaatttataccactgctatatcaagatggattgtgttgagcttctaatattt
gacgagtgtcatcatgctcaagtcaaaagtgaccattcttatgcagaaatcatgagagtg
ttctataaaacagatgatcctaaacggcctcggatttttggtatgactgcatctccagtt
gtaggaaaaggtgcttgtaatcagcaaaatttatctagaagcatcaatagtctcgagaag
ttacttgatgcaaaggtttattcagttgaagatagggaagaactgcatgcatttgtgtca
tcaccaattgttaacatatattattatggtcctgttgcgaatgggtcttctagctccttt
atgtcctactgttccagacttgaggacgttaaacgcaagtgcatagtggctcttggtcag
gttgaaggtgagcatgaagttctgctggccaccaagaaattgttgttcagaatgcatgaa
aatatcttattttgtttggaaagccttggtgtttggggggcatggcaggctagtaaaatt
ctccttagtggagataactctgagcgaagtgaattgatagaggaagcagagagaaaccca
agaaatgactctttaagtgataggtaccttaatcaagctgctgaaatttttgcatcaggt
tgcaaggaagatggtggaatctcagatatgttaaatgttgattttttagaggaacccttt
ttctcaaagaagcttctacgacttattggaattctttcttccttcaggcaacaactcaat
atgaaatgtataatttttgtgaatagaatagttatagctcggtccttgtcatacatactt
cagaatctaaaatttttggcatattggaagtgtgattttcttgttggtgtacactcaaaa
ttgaggagcatgtcaaggaagaccatgaaccatattcttacaaaattccgatcaggggag
ctaaacctcttgatcgctacaaaggttggtgaagaagggcttgatattcagacttgctgt
cttgtcatacgatttgatcttcctgaaacagtatctagctttatccaatcaagaggtcga
gcacgaatgcctcagtctgaatatgcattccttgttgatagtgggaatgaaaaggagcta
ggattgataaacgaatttcgaaaagatgaaaatcggatgaacagagaaatttcttcacgc
tcatccaatgagacatttcatagtcatgaagaaagcatctatagagtggcttcaactggt
gcatctattacatctggacgtagtatatccttactgcatgaatattgctcaaaacttcca
catgacgagtacttcgaccccaagccgaagtttttctattttgatgatttaggagggact
gtatgtcatgtaaatctaccctccaatgcaccgatcccccaagttgtcagcagcccacaa
tcttctagggatgctgctaaaaaggatgcttgtctaaaagctgtagaggaattgcataaa
cttggtgctctcagtgactatctcttgcccatgagaggcagaggcagtgccaatgaacag
gaatcagaacttaactcctccgattctgacagctctgaagatgagagatcgcgtcgagaa
cttcacgagatgatatttcctgctgctctaaaagagtcttggactggttctggatatctt
gttctttactgttaccatataaaatgtactccagatcctagagatagaaactacaaagaa
ttcggtttatttgtgaaggcaccattaccccaggaggctgagagaatggaccttgagctt
catcttgcacgtggaagatctgtaatggtaaatttaatgccatcaggggttgtggagctt
ttggaggaggagattacccaggcagagagttttcaggagatgtttcttaaggtcatttta
gacagatcagaatttgttcaggagtacattgctttgaggaataattcttctagatctgtt
tcatcaacatcttacttgttgcttcctatgatttttcatgataatgagggatcacttttc
atagattggaatgttattagaagatgtttgtcctcccaaattttccagaatcatgcatgc
tctattgtcaagggaactgcttcctcggatacccacctgatgctttatgatggccgtaga
tcgtcaagtgatattgagaatagtttagtgtatgtcccctacaagggtgaattctttttt
gttactaacatcgagagggggaagaatggacacagtcaatacaagaactcaggcttctca
agtcattttgaacatttgaagacaaagtttggcattcatcttaaccaccctgagcagcct
cttcttcgtgcaaaacctctgttccttttgcacaacttgcttcataatagaaagcgggaa
gattctgaagcacatcatctggaagaatattttattgatttgcctcccgaggtttgtcag
ttgaaaataatcggattttcgaaagatattggaagctccatatctttgttgccatcaatt
atgcatcgtctggaaaatttgcttgttgccattgaattgaagtgtaggctagcagctgct
tttccagcgggtgctgaggttactgctaacagaattctggaagcactcaccactgagaag
tgccaggaacgcatttccctggaaaggcttgaaatacttggtgattcattccttaaattt
gtagtagcaaggtacctttttcttacccatgacaagttcgacgaaggagaacttacaaga
agacgttcttatttggtgaaaaatttcaatttgctcaagctagcaactagaaagaattta
caggtatatatacgtgaccagccatttgaacctagtcaattttatttacttggtcgtcct
tgcccaagaatttgtaatgaggaaactagaaaagatatccattctcacgatgaagcaaga
aataatggaaaagtcaacgagaccaagtgcagcaaaggccatcattggttacaaaagaaa
acgatcagcgatgtggttgaagctctggtaggagcattcctagttgacagtggcttcaaa
gctgcaattgcatttctcaaatggatcgggatacgagtagaatttgaagcttcactagtt
accaatgctctcatggcaagcaatggttacgtcctacttgcagatagtatagacatttct
gcacttcaaaattcattaggccatcagtttctccataaaggtctgctgcttcaggcactc
attcatccatcttaccacaagcatggaggaggttgttaccagagattagagtttcttgga
gatgctgtcctggattacttgatcacatcatatctatattcagcgtatcctaaactgaag
ccaggtcaattgacagatttgagatcagtgtttgtgaggaatgaggcttttgccaatgtt
gccgtagatagattcttctacaagtttctgctttgtgattctactagccttctaagtgat
ataaaaagttatgtgcacttcattaaagcacctccttctgaaagggattcacgtgagcag
ccgagatgtccaaaggctttgggagacttggttgaatctagtgttggggccgttcttgtt
gatacagggtttgacatgaactgtgtttggaagataatgttatcttttatggatcccatc
atgaacttttcaggcttccagcttagtcctattcgggacataacagaattttgtcaaaat
tgtggctggaaactaaagtttaattcatcaaaaatggaaggatattattcagtcaaagca
gaggtgaaaggaggcaactttcatgccgctgcttctgcagccaaccgtcgaaagaaagat
gccgagaaaattgctgcgaacttaatactcacaaagctgaaggccaaaggattcatacct
gaggtcaattcattagaagagatcttaaagtcgagcaagaagatggaacctaagttgatt
ggttatgatgaaacaccctcggtcatgattgatcaagttgacaatggtcttagaacatca
aatgtgccagaattttctagtgaaaactcagatcctcgcatgcactatgaagttgacaat
tctcatccagtacgcattacacggataagcaaaatgttggtttcttcatctcgaactgca
ggggaacaactaaagctggcctttgaaggtcacgatagtccaacagacttgcagtcatca
tcaggtcggtcggggaaaacaacggcaagatcccgtctgtatgagatctgtgctgcgaac
cattggaatcgcccttcatttgattgtatgaatgaggaaggaccaagccatttaaagatg
tttacttacaaggttggattagagattgaagaaacccctgatacgatttttgagttcttc
ggagcacctcatttgaaaaagaaagctgcagccgagcatgcggccgaagcagctctttgg
tacctgaagaagggaggatacttggctgggacagactga
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integrated database retrieval system