Cucumis melo (muskmelon): 103488286
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Entry
103488286 CDS
T03195
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103488286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmo03021
]
103488286
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103488286
Transcription machinery [BR:
cmo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103488286
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103488286
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
103488286
NCBI-ProteinID:
XP_008445183
UniProt:
A0A1S3BC28
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All DBs
Position
12:complement(21340170..21346486)
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AA seq
708 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDAAPTNPAAAASSSSLPLIPSDSSAPPPLSNSLPGSLGPTLAPE
PLGAPTANVGTRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ
DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGSYNYGSS
NKFFSQRGVGLPQQNEKSQFPQGPAPVTQGVIGKPSTAESANVQQQQVQQPAQQTSQTQI
QSVSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD
SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELS
FQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKREEE
KAKGVNPDIGNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPH
MPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDF
MGPPSAMMFRGRPSQPGAMFTPGGFGMMMGQGRGPFMGGMGVTGTSPARPGRPVGVSPLY
PPPAVPSAQNINRAIKRDQRGPTSDRNDRYIVGPDQNKGQEMLSSGHDEGMQYKQGSKAY
PDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggaggattctgagggtgttctcagctttgatttcgagggcggtctcgatgctgccccc
acaaaccccgccgccgccgcctcctcctcctccttacccctcatcccctccgactcttct
gcccctccccccctctccaattcccttcccggctccctcggtcctactcttgctcctgaa
ccccttggtgcccctactgccaacgtcggcacccgcaggagcttccgccaaaccgtttgc
cgccattggcttcgcagcctttgtatgaagggcgatgcttgtggattccttcaccagtat
gataagtctcggatgcccatttgccggttctttcgtctctatggcgagtgccgcgagcag
gattgcgtgtataaacataccaatgaagatataaaggagtgcaatatgtacaagtttggt
ttctgtccaaatggtccagattgtcgatataggcacgcaaagctacctggacctccacct
tcggtggaagaaatccttcagaaaatacagcacttaggttcatacaattatggctcctca
aacaaattcttttcacaacgtggagttggcttgccccaacagaatgaaaaatctcagttt
cctcagggtccagcccctgttactcaaggagtgattggaaaaccttctacagcagaatct
gctaatgtccaacaacagcaagttcaacagcctgcacaacaaaccagccagactcagata
caaagtgtttctaatggccagcccaatcagttaaacagaactgcaacgtctttgcctcaa
ggaatatctaggtactttattgttaaaagttgcaaccgtgagaatttggagttatctgtg
caacaaggggtatgggcaactcaaagaagcaatgaagctaaacttaatgaagcttttgat
tctgctgataatgttattttgattttctcagtcaaccggactcgacattttcagggttgt
gcaaagatgatgtccaggattggtggttctgtcagtgggggcaattggaaatatgcacat
ggaactgcacattatggtcaaaacttttcacttaaatggcttaagttatgtgaactatcc
ttccagaaaacacgccatttgaggaatccatataatgaaaacttacccgtaaagatcagt
agagattgccaagagctagagccctctattggtgagcagctggcttctttgctttatctt
gagccagacggtgaactcatggctgtctcaatagcagcagaatcgaaacgggaagaggag
aaagcaaagggagttaatcccgatatcggaaatgagaacccagatattgtcccgtttgag
gataacgaagaagaggaagaggaagagagtgaagaggaggaggaggagagctttggccaa
tccgttggtctaccagcacaaggcagagggaggggcaggggaatcatgtggcccccacat
atgccaatgggacgtggtgccagacccttccatggaatgcaaagttttccacctgggatg
atgggtccggatggtttgtcttatgggcctgttacacccgacggatttcccatgcctgac
atttttggtatggctcctcgtggttttggtccatatggccctaggttttccggtgatttt
atgggtcccccatcggctatgatgtttcgtggacgtccttctcaacctggggctatgttc
acccctggtgggtttgggatgatgatgggccaaggacgtggtccctttatgggtgggatg
ggagttactggtactagccccgctcgacctggtcgtcctgtgggtgtttctccattgtat
ccacctccagcagtaccctcagctcagaacatcaatcgagccattaagagggaccaaagg
ggaccgactagtgatcggaacgacagatacattgtgggaccggaccaaaacaagggccag
gagatgctaagtagtggacatgatgaaggaatgcaatataagcagggatcaaaagcttat
cctgatgagcaatatggaatgggaacaacctttaggaatgaggaaagcgaaagtgaggat
gaggcacctcggcgatcaaggcatggagaggggaagaagaagcggagaggttcagaagga
gatgcgactgcaatctctgatcagtga
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integrated database retrieval system
