Cucumis melo (muskmelon): 103488306
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Entry
103488306 CDS
T03195
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03013
Nucleocytoplasmic transport
cmo03015
mRNA surveillance pathway
cmo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103488306
09122 Translation
03013 Nucleocytoplasmic transport
103488306
03015 mRNA surveillance pathway
103488306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103488306
03041 Spliceosome [BR:
cmo03041
]
103488306
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103488306
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103488306
Spliceosome [BR:
cmo03041
]
Complex C
Other components
EJC/TREX
103488306
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103488306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
103488306
NCBI-ProteinID:
XP_008445205
UniProt:
A0A1S3BC35
LinkDB
All DBs
Position
3:26799555..26804837
Genome browser
AA seq
427 aa
AA seq
DB search
MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILAL
SRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNR
AAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagagacaacgaatatgaggaagagctcctcgactacgaggaagaagaa
gagaaggcccccgattccgttggagctaaagtcaacggtgaagctggaaagaagggttat
gtcggaattcatagttcgggattcagagactttctattgaagccagagcttctccgtgcg
attgtagactctggatttgagcatccatctgaagtacaacatgaatgtattccccaagct
atcctcggcatggatgttatttgtcaagctaaatctggtatgggtaaaactgctgtcttt
gttctgtcaacgctgcagcagattgaccctgtggctggtcaagtatctgccctagttctg
tgccataccagggagcttgcataccagatctgtcatgagttcgaaaggttcagcacttat
cttccggatctgaaggttgctgtcttctatggtggagtgaatattaaaattcacaaagat
cttctgaaaaatgaatgtcctcatattgttgttggaacacccggaaggatattggcactg
tcgagagataaagacctatccctgaagaatgtccgacattttatcttggacgagtgtgac
aagatgcttgagtcacttgatatgcggagggatgtacaagagatcttcaagatgactcct
cacgacaaacaagttatgatgttttctgcaacacttagcaaagaaatccgcccagtttgc
aagaagtttatgcaagatccaatggaaatatatgtagatgatgaggcaaagctgacattg
catggtcttgtccagcactacatcaaattgagcgagatggagaaaaatcggaagttgaac
gaccttcttgatgcattggacttcaatcaagtggttatttttgtcaaaagtgttaatagg
gcagctgagctagataagttattggtggagtgtaacttcccctctatatgcatccactct
ggcatgtcgcaggaagagaggttgactcgatacaaaggttttaaggaaggacataagcgc
attcttgtggctacagatttggttggtcgaggaattgacattgaacgtgtaaacattgtt
atcaattatgatatgccagattcagctgatacatatctgcacagggttggcagagctggt
agatttggtaccaaagggcttgcaattacttttgtgtcatctgcagctgattctgatgtt
ctcaacaatgttcaagaaaggtttgaagtcgatattaaggagcttccagagcagattgat
acctccacttacatgccatcatag
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