Cucumis melo (muskmelon): 103488578
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Entry
103488578 CDS
T03195
Name
(RefSeq) endoribonuclease Dicer homolog 3a isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cmo
Cucumis melo (muskmelon)
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cmo03036
]
103488578
Chromosome and associated proteins [BR:
cmo03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
103488578
microRNA pathway
RISC loading complex
103488578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
ResIII
Helicase_C
PAZ
SNF2-rel_dom
SWI2_SNF2
DND1_DSRM
AAA_22
Motif
Other DBs
NCBI-GeneID:
103488578
NCBI-ProteinID:
XP_050938033
LinkDB
All DBs
Position
3:complement(24986540..25003873)
Genome browser
AA seq
1643 aa
AA seq
DB search
MHEPEQENRDGARKRRFCDLEPSVASDQSNFNMAEGFIPRRYQMEVFEVGMRRNTIAVLE
TGSGKTMIAVMLIKEIGKAMKSSGDKKLIIFLAPTVHLVHQQFNVIKDHTDFEVAEYYGA
MGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIIDECHRATEEEYFS
NLLLVKEFYHKSDNKPKIFGMTASPVIRKGVSSSFDCECQIADLESILDSQVYAIEDKKE
VEIYVPSAKEICIFYEPAKPQTTELRAKIEALWFKFDASLSNSQEAMQGHYKDVDSKLKA
LKKRLSSDHLKITYCLDELGIMCAYEAIKVLFENISVPNEESDVYRESFLQYKHFLEEAL
LVIGESLSLGNENIPNLGFDLWKAVDLGYISPKLFELLQLFESFGVSRQLLCLIFVERII
AANVIKRIVKKVENLSHFTVSYVTGCNASVGALAPKVQKETLELFCHGKLNLLFSTDVVE
EGLHVPNCSFVVRFDLPKTVRSYVQSRGRARQNNSQYILLLERGNLKQRALLFDVIRSDR
SMTDAAMSRDSDACVLKPFSLVETDCYIVEATGASVTADSSVGLIYQYCKKLPGDKYFSP
KPIFQLSYGEGSYECQLTLPPTAAFQTIVGPSTRNSNLSKQLVCLEACKKLHKMGALNDH
LLPSVEEISESDMGLKSNASMSRAGSTKRKELHGRTAIRALSGTWGEQDEGATFQAYKFD
FSCSVIYEIYSGFVLLIESKLDDDVSNFELELYLLSKMVKASVSFGGEVHLDAEQITKAK
CFQELFFNALFGRLFIGSKTTGKKRDFLLQKDTNSLWISSNMYLLLPVDLPDDSTHDLWK
IHWRAIDSCVSVVEFLKKNSSLDAERNCGAGAISDSWPSRNNSAETGSNAANVIHFANCV
LDVHSLKDRVVLAIHTGRIYSIVEVVSNTSAESPFDGNSDKGPPDYITFADYFNKRYGIS
LSFPKQPLLRLKQSHNPHNLLVNFKDEGNTSDKLPSGPAFKKPQMHVHMPPELVLSMDVP
KGVLKSSYLLPSLMHRFESLMLASQLRKEINYHSNSLSISSSLILEALTTLGSCENFSLE
RLELLGDSVLKYAVSCHLFLKFPEKHEGQLSSRRQQVICNATLHALGTKCGLQGYIRDSA
FDPRRWVAPGQCTNRPVPCKCGVDTVEVPLDDKFCTEDPKVVLGKCCDKGHRWVVSKTIA
DCAEALIGAYFVDGGIIAALHVMKWLGIDVDLDVALVVDAITSASLRSCPLGDTEIATLE
SKIGYDFAVKGLLLEAITHTSDQEIGVNYCYQRLEFLGDSVLDLLITWHYYQKYLDIDPG
ELTDLRSASVNNENFAQVAVRRNLQHHLQHCSGLLMSQITEYVKYLSESHDTGKPLHGNK
GPKVLGDMVESIAGAILIDTKLNLDEVWKIYKPLLTPFVTPDKLELPPLRELIELCDSLG
YFIKDKCTRKGETFHAELRLQLQDALLIGEGYERTRKASRGEAAHRLLVQLETRGISYSR
SASKKRKQNPSHDEAAMVLPSSVNCSTEACDPNVETPVIGPINLKKGGPRSTLFELCKKL
QWPMPTFNTVENKSRVQIEFGEGLEKRKGFNSFLSNITLQIPNAGYVECEGEARADKKSS
FDSASLVMLQELQQQGRVIINDS
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atgcacgagcctgagcaggaaaatcgcgatggtgctcgcaagagaagattctgtgacctg
gagcccagcgttgcttctgatcagtccaatttcaacatggccgagggcttcattcctaga
aggtatcaaatggaggtctttgaagttgggatgaggaggaacaccatagctgtgttggaa
acaggttctggaaagaccatgatcgcagtgatgcttataaaagaaattggaaaagccatg
aagtccagcggtgataagaagttaataattttcttggctcccactgtgcatttggttcac
cagcaatttaacgttattaaggatcacactgattttgaagtggcggagtattatggggcc
atgggggttgatgattggaatatgaactgctgggaaaaagaaacaagcgaacgcgatgta
ctcgttatgaccccccaaattcttcttgatgcactgaggaaggcatattttagactggga
accgtatgcttgatgatcattgatgaatgccatcgtgctactgaagaagaatatttttct
aaccttcttttggtgaaggaattttatcacaaatctgacaacaaaccaaagatttttgga
atgactgcctcacctgttattagaaaaggtgtttcctcttccttcgattgtgaatgccaa
atagcagacctcgaaagtatcttagattctcaggtttatgctattgaagataagaaagaa
gtggaaatatatgttccttccgcaaaggaaatttgcatattttatgaaccagctaagcct
caaactacggagttgagggcaaagatagaagctctgtggttcaagtttgatgcatcattg
tcaaactcacaagaggcaatgcaaggtcactataaagatgtagacagtaagcttaaggca
ctgaaaaaacgactgtctagtgatcatttaaagatcacttattgccttgatgaacttggt
attatgtgtgcttatgaggcgattaaagttttatttgagaatatcagtgttccgaatgag
gaatctgatgtttatagagaaagttttttgcaatataaacattttcttgaggaagcatta
ctagtaattggggaatcactttcacttggcaatgaaaatataccaaatttgggttttgac
ttatggaaagctgtagacttgggctacatttctcccaaattgtttgaacttctccaactc
tttgaatcatttggagtatctaggcagttgctctgtctcatatttgttgaaagaataatt
gctgctaatgttatcaaaagaatcgtgaaaaaggtagaaaatttatcgcattttacggtt
tcatatgtgacgggctgtaatgcatcagttggtgcacttgcaccgaaagtccagaaggag
acactggagttgttttgtcatggcaagctcaatctattattttccactgatgtagttgag
gagggacttcatgtaccaaattgctcatttgttgtacggtttgaccttcctaagactgtt
cgcagttatgtacaatctcgaggtcgtgctcgacagaacaactcccaatatattttgttg
ctggagaggggaaatctgaagcaaagagccttgctatttgatgtcataagaagtgaccga
tcaatgactgatgcagctatgagtagagactctgatgcatgcgttttgaaacctttctca
cttgtggagacagattgttacattgtggaggcaactggggcatcggttactgcagattct
agtgttggtctcatatatcaatactgtaaaaagctccctggtgataaatatttcagtcca
aaaccaatctttcaactctcatatggtgaaggatcctacgagtgtcagctaactttacct
cctacagcagcttttcaaaccatagttggtccttcaactaggaattctaatttgtccaag
cagcttgtatgcctggaggcttgtaagaagctacataaaatgggtgcacttaatgaccat
cttctcccctctgttgaagagatatcagaatctgacatgggtctgaaaagcaatgcatcc
atgtctagagcaggatcaacaaaaagaaaggaactgcatggaagaactgcgatcagagct
ttatctgggacttggggagaacaagatgaaggggccacttttcaggcttataaatttgac
ttctcctgtagtgttatatatgagatttattctggatttgtgcttctgatagaatcaaaa
cttgatgatgatgtgagcaattttgaacttgaactttatttactctcaaagatggttaaa
gcttctgtgtcctttggcggggaggttcatttggatgctgaacagataacgaaagcaaag
tgctttcaggagcttttcttcaatgcactgtttgggagactgtttattgggtcaaaaaca
acaggaaaaaagagggattttttacttcagaaagatacaaattctctttggatttcatca
aacatgtatctgcttctaccagtggatttaccggatgattcaactcatgatttatggaaa
atacattggagagcaatcgattcctgtgtttctgtggttgagtttttgaagaaaaattca
tctttggatgctgaaagaaattgtggtgctggtgccatatcagattcatggccttctaga
aataactctgctgaaactggaagcaacgctgcaaatgtaattcactttgcaaactgtgtt
ctagatgttcattctttaaaggacagggtagttttggctattcatactggaagaatctac
tcaattgttgaagttgtgagtaatacatctgctgagagcccttttgatgggaatagtgac
aaaggaccacctgactacattacctttgcggactacttcaacaaaaggtacgggatttcg
ttgagttttccaaaacaacccctattgcgtttaaagcaaagtcataatcctcacaatcta
cttgtcaactttaaggatgaaggtaatactagtgataagttgccatctggccctgcattc
aaaaagccacaaatgcatgtccatatgcctcctgaacttgtgcttagcatggatgtccca
aaaggggttttgaagtcttcatacttgctaccatctttgatgcaccgttttgaatctttg
atgttagccagccaacttaggaaggagattaattatcattcgaacagtctcagtatatca
agctctttgattttggaagcacttacgacccttggaagttgtgagaatttttccttagag
aggttggaattgcttggtgattcagtgttgaagtatgctgtgagctgccacctctttctc
aaattccctgaaaaacatgaagggcagttgtcgtctaggcgccaacaggttatctgtaat
gcaaccttacatgctttgggaacaaagtgcgggttacagggatacatacgtgattctgca
ttcgatccacgtcggtgggtggcaccagggcaatgtactaatcgtcctgttccttgtaaa
tgtggagtggatacagtagaagttcctttggatgacaagttctgcactgaagatccaaaa
gttgttttgggaaagtgctgtgataagggacacaggtgggtggtttcaaaaactatagcc
gactgtgctgaagctctcataggggcttattttgttgatggtggaatcattgccgcactc
catgtgatgaagtggcttggaattgatgttgaccttgatgttgcattagttgttgatgca
attacttctgcatctctgagatcctgccctttgggagatactgagattgcaaccttagag
tcaaaaattggatatgattttgctgtcaaaggattattgctggaggctataacacacaca
tctgatcaagaaattggtgttaattactgttaccagagactagagtttcttggtgactca
gtgttagacttgctcattacatggcattattatcagaagtacttagatattgacccaggg
gagttgactgatttgcgctctgcttctgttaataatgaaaattttgctcaagtggctgtg
aggcggaatcttcagcatcatcttcaacattgttctgggcttctgatgagtcaaattact
gaatatgtgaagtatttgtccgagtctcatgatactggaaagccactgcatggtaataaa
ggccccaaggttcttggtgatatggtggaaagtattgcaggtgccatactgattgacaca
aagcttaatctagacgaagtgtggaaaatatataagccacttctgactccatttgtgacc
cctgataaacttgagcttccaccgctgcgagaactaattgaattatgtgattctcttggg
tatttcatcaaagataaatgtactaggaagggggaaacttttcatgcagaacttagatta
cagttgcaagatgccctattgataggtgaaggatatgaacgaactagaaaagcttccaga
ggggaagctgctcatcgcttgttagttcaacttgagactagaggaatttcttactctcgt
tctgcctctaagaagagaaaacaaaatcctagtcacgatgaggctgctatggttcttcct
tcatctgtcaactgttctacagaagcctgtgatcccaacgtggagacccctgttattgga
ccgatcaacttaaagaaaggaggaccacggagtactctgtttgaactatgcaagaaactg
cagtggccaatgccaactttcaatacggtagaaaataaatcaagggtccaaatcgaattt
ggcgaaggcttagagaaaagaaaagggtttaacagttttttgtcaaatattactttgcaa
ataccaaatgctggctatgttgaatgtgaaggtgaagctcgagctgataagaagagctcg
tttgactcggcgtctcttgtcatgcttcaggaacttcaacaacaaggacgagtcattatt
aacgactcatga
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