Cucumis melo (muskmelon): 103489319
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Entry
103489319 CDS
T03195
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103489319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103489319
03012 Translation factors [BR:
cmo03012
]
103489319
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103489319
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103489319
Translation factors [BR:
cmo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103489319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
NACHT
nSTAND3
ATPase
AAA_19
Dicer_dimer
T2SSE
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
103489319
NCBI-ProteinID:
XP_008446652
UniProt:
A0A1S3BF36
LinkDB
All DBs
Position
10:complement(1506115..1518376)
Genome browser
AA seq
1222 aa
AA seq
DB search
MPFPILLLPLHLPLPLPLPLPPPPPPPPLSLSAISSPFSTSQNPKTLPHFSMKDRSPSSN
AAVYVPPHIRLRSVVTPSNNSSPVPAVDCKLKTAPLSLLDSGTTASPCLQARSQELLPTG
NSRLQCDSAYDDAAPTNSWSFNFECSHQSGITPSVNIDLWKRKLALLLRDKEKQELVSRE
KKDRHDFEEIAALASRMGLYSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVFLPPGLLRR
VDEHLREFLSQKSRCKGFQDISVSRTSSSGSIATDEGLFEQPEPQGSSKAVMEKILWRRS
SHLRDQQQAWQSSLEGREMLEFRRNLPAYKEKDALLATISQNQVIIISGETGCGKTTQVP
QFILESEIESLRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRD
THLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLIL
MSATLDAELFSSYFGGAQIIHIPGFTHPVRTHFLEDILEMTGYRLTPYNQIDDYGQEKTW
KMSKQAPRKRKTQIASTVQDALTAADFKEYSLQTQESLSCWNPDCLGFNLIEYLLVKICE
SETPGAILVFMTGWDDISSLKEKLQSHPLLGDPTRVMLLACHGSMASSEQRLIFTEPDKG
VRKVVLATNIAETSITINDVVYVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRA
GRVQPGECYHLYPRCVFGSFSEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPE
LLAVQNAIEYLKIIGAFDESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPILTVVA
GLSVRDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFL
SIQSMKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDEQLIRAVICNGLYPGVCSVVQN
EKSFSLKTMEDGQVLLYSNSVNARESRIPYPWIVFNEKIKVNSIFLRDSTAISDSMLLLF
GGSISKGDHEGHLKVLGGFLEFFMKPDLAETYQKLRVELEELIRIKLLNPKMDLHSHHEL
LSAVRLLISEDHCEGRFVFGRQILQQPSKTSAPAAAPPPTAVSRIESGPGGDNSKSQLQT
LLTRAGYAAPIYKTKQLKNNQFRATVEFNGLQIMGQPCTNKKNAEKDAAAEALEWLMGGN
QMGHDYVNQMSMMLKRSKKDHN
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgccatttccaattcttcttcttcctcttcatcttcctcttcctcttcctcttcctctt
cctcctcctcctcctcctcctcctctctctctctctgcaatttcatcccccttctccact
tcccaaaaccctaaaaccctcccacatttctcaatgaaggaccgctctccttcctccaat
gccgctgtttacgtccctcctcacatccgtctccgctccgttgttactccttctaataat
tcatctcccgttcccgctgttgactgcaagctcaagacggctccactctcgctgctcgat
tcaggaaccactgcttcgccttgcctgcaagctcgatctcaagaactgctccccacgggg
aactcgcgtttgcagtgtgattcggcctacgacgatgcagctcctaccaacagttggagt
tttaattttgagtgttcgcatcaatcgggtattacaccttctgtaaacattgatttgtgg
aaaaggaagttagctttacttttacgtgacaaggagaagcaagagttggtttcaagggag
aaaaaagatagacatgactttgaggaaatagctgctttggcaagtagaatgggactttat
agccatctatatgccaaagttgctgtttttagtaaggtcccattgccgaactacagattt
gatttggatgatcggcgtccacagagagaggtctttttgcctcctgggttgcttagaaga
gttgatgaacatctgagagaatttctctctcaaaagtctaggtgtaaaggttttcaagat
atctctgtctctagaacaagcagcagcggaagcattgctacagatgaagggctttttgag
caacctgagccacaaggatctagtaaggccgtgatggaaaaaattctttggaggagaagt
tcacatctgcgtgatcaacagcaagcttggcagtcatctcttgaaggaagagaaatgctg
gaattccggagaaatcttcctgcttacaaggagaaggatgcattattggccacaatctca
cagaatcaggttattattatttcaggtgaaactggttgtggcaagactacgcaagttccc
cagttcattttggaatcagaaatagaatcactccgtggggctgtttgcagcatcatatgt
acacagccaagacgaatatcggctatgtctgtctctgagagagttgcttctgaaaggggg
gagaaattgggtgaatctgttggttataaagtgcggctggagggtatgaaagggagggat
actcatcttctcttttgcactacgggtatcttgttgagaagattgctggttgatagaaat
ttgaaaggcataactcatgttattgttgatgaaattcacgagcgtggaatgaatgaagat
tttctactaattgtcctgaaagatctccttcctcgtcgaccagaattgaggttgattcta
atgagtgcaactttagatgcagaacttttctcatcctactttggtggggctcaaataatt
cacattccgggattcacacaccctgtccgaactcattttctggaagatattctagaaatg
acgggttacagattaactccatacaatcaaatagatgattatggacaggagaagacgtgg
aaaatgagcaaacaagcaccaagaaagaggaaaacccagattgcctctaccgttcaggat
gcccttacagcagctgattttaaggagtacagtcttcaaactcaggagtctttatcgtgt
tggaatccagactgtcttggttttaatctcatagaatatcttctagttaaaatatgtgag
agcgaaacacctggagctattcttgtgtttatgactgggtgggatgacatcagttctctc
aaggagaaacttcagtctcatcctttattaggagatccaactcgtgtcatgttgttggca
tgccatggctcaatggccagttcagagcagaggttaatatttactgaacctgacaaagga
gtgaggaaggtagtgctcgcaacaaatattgccgagacaagtataacgataaatgatgtc
gtgtatgttctggactgtggaaaggcgaaagaaacatcatacgatgctttaaataacact
ccttgtttgcttccctcttggatatccaaggtttctgctcaacaaagaagaggaagggct
ggccgtgttcaaccaggagaatgctaccatctataccctaggtgtgtgtttggttctttt
tctgagtatcagctaccagaaattttgagaacacctttacagtccctctgcttgcaaata
aaaagcttaaagcttggaagtatatcggagtttctatctagggctttgcagtcaccagag
ctacttgcggttcagaatgctattgaatatttgaagatcattggagcatttgatgagagt
gaaaatcttactgttttaggtcgttatttaactatgctcccaatggaaccaaaactggga
aagatgttgatagtaggcgctatcttcaattgcttggatcctattttgactgttgttgct
ggtctcagtgtgagagacccttttctcacgccacttgagaagaaggatgccgcagaggct
gcaaaatcccaattttcacaagatcatagcgatcaccttgctattatccgggcttatggg
ggatggaaagaagccgagaggaactatggtggatatgacttttgttggaagaacttcctt
tctatacaatcaatgaaggctattgattctttaaggaaggagtttttttctttgcttaga
gatactggcttggttgatgggtactcagacacctacaatgcctggagtcttgatgaacaa
ctcatacgtgcagttatttgcaatggcctctatcctggagtttgctccgttgtgcaaaat
gagaagtcattttctctcaaaactatggaggatggccaggtgcttctctattcgaactcg
gtgaatgctcgagagtcgaggattccatatccatggatagttttcaatgagaagattaaa
gtgaactccattttccttagagattcaacagctatctctgactcgatgctgcttctcttt
ggtggaagcatctcaaaaggtgatcatgagggacacttgaaagtgctgggcggttttttg
gaattttttatgaaacctgatttagcagagacatatcagaaattgagagtggaacttgaa
gaacttatacgaataaagctactaaatccaaagatggacttgcactcccaccatgagctc
ctatctgctgtacgcttgcttatttcagaagaccattgtgaaggtcgatttgtttttggc
cgccagatccttcagcagccgtccaagacatcagctccagcagcagcaccaccaccaact
gctgtttcaagaattgaaagtggacctggtggggacaattccaagagtcagctccagact
ttactcacgagggctggatatgctgcacccatctataagactaagcaattgaagaacaat
caatttcgagcaactgtggaatttaatggactgcaaattatgggacaaccttgtaccaac
aaaaagaatgctgaaaaggatgcagcagccgaggctcttgagtggttgatgggtggaaat
cagatggggcacgactatgtcaaccaaatgtctatgatgttaaaaaggagcaagaaggat
cataactga
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