Cucumis melo (muskmelon): 103489349
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Entry
103489349 CDS
T03195
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103489349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103489349
03012 Translation factors [BR:
cmo03012
]
103489349
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103489349
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103489349
Translation factors [BR:
cmo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103489349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
AAA_16
AAA_19
T2SSE
PhoH
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
103489349
NCBI-ProteinID:
XP_008446709
UniProt:
A0A1S3BFR0
LinkDB
All DBs
Position
10:1322213..1331827
Genome browser
AA seq
1143 aa
AA seq
DB search
MHNFKRLPNFLLVLSKNISCDLSSNHGLAVRPLKLLLQQSRSYSVSRVWRCSYHYAAEQF
SDDEYECDGENNTASSSVANIDEWKWKLSLLSRNEKDQEIVSRDNRDRRDFEQISNLAKK
MGLYCSMYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEHCDRIRLSS
GKASEIPNDAKSIEEDKDVNMDEFEDSYLDGSVMEKVLQRRSLRMRNMQRAWQESPEGRK
MLDFRRSLPAFKEKEKLLQAIAQNQVVVISGETGCGKTTQLPQYLLESEIETGRGAFCSI
ICTQPRRISAMAVSERVSIERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSD
RNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSSYFGGAP
TIHIPGFTFPVRSYFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQKQLAPRKRKNQITSL
VENALDKCTLGNYSSNTRDSLSSWMPDCIGFNLIEAVLCHICRKERPGAVLVFLTGWEDI
SSLRDQLRAHPLLGDPNRVLLLTCHGSMATSEQRLIFEKPAQNIRKVVLATNMAEASITI
NDVVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGKCYHLYPKCVF
TAFSEYQLPELLRTPLNSLCLQIKSLQVPSVGEFLSSALQPPKPLAVQNAIDFLKMIGAF
DEKENLTNLGKFLSMLPVDPKLGKMLIMGAIFHCFDPILTIVSGLSVRDPFLLPQDKKDL
AGIAKGRFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSMQTLQAIDSLRRQFS
FILKDAGLVDLDGSTSNKLSHNQSLVRAIICSGLFPGVASVVHRETSMSFKTMDDGQVLL
YANSVNARFNTIPFPWLVFGEKVKVNTVFLRDSTGISDSMLILFGGAVNRGVQAGHLKML
NGYVEFFMDSSLADCYLQLKEELDKLIENKLENPGLDILKEGKYLVLSVQELVSGDQCEG
RFVFGRNSKKQAVSKDDRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEF
KGMQFVGKPKKNKQLAERDAAIEALAWLTQTSDNNANSDDDSPIDVTDNMLKLLGKRRRS
KRR
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgcataatttcaaacgacttccaaattttctcttagtattatcgaagaacatcagctgc
gacctgtccagcaatcacggccttgccgtgaggccacttaaactgcttctgcagcagtct
cgttcctattctgtttcacgagtctggcgatgttcgtatcactacgcggcggagcaattc
tcggacgatgagtacgagtgcgatggtgagaacaatacggcctcgtcctctgtggccaac
attgacgagtggaaatggaaactgagcttgctatctcgaaatgaaaaggatcaagagatt
gtatccagagacaacagagacaggagagattttgagcagatctcaaaccttgccaaaaag
atggggctctactgttcaatgtacggaaaagtggtagttgcaagcaaagttccccttcct
aactaccggcctgatttggacgataaacgaccacaaagggaggttgttattcctttaagt
ttgcaaaggagggtggaaggtttactacaggaacattgtgatcgcattcggttaagttct
ggaaaggctagtgagattccaaatgatgccaagtccatcgaagaggataaagatgtgaat
atggatgaatttgaagattcttatcttgatgggtctgtgatggaaaaggtacttcaacgg
aggagtttgcggatgcgaaatatgcaaagagcatggcaggaatcacctgaagggaggaag
atgctggatttcaggaggtctctgccagcattcaaagagaaggaaaaattactccaggca
atagcacaaaatcaggtagtagttatatctggagaaactggatgtggtaagactacgcaa
cttcctcaatacctattagaatcagaaattgaaactggtcgaggagcattctgtagcata
atatgcactcaacctcgaaggatctctgctatggctgtttctgaaagagtgtccatagag
cgaggagaaccccttggtgaaacagttggctataaagttcgattagaaggtatgaaaggg
aaaaacacccatctgttgttttgcaccagtggtatattacttcggaggcttctaagtgat
cgtaatctaaatggggttacccatgtctttgtggatgaaattcacgagcgaggcatgaat
gaagattttctgttgattgtcttgaaggatctccttccacgtcgccgggatttaagatta
atcttgatgagtgccactttaaacgctgaacttttttccagttattttggaggagcacca
actattcacatcccaggttttacatttccagtgaggtcatactttctggaagatgtgtta
gaaatgactggttacaagttgacatctttcaatcaaattgatgattatggccaagagaaa
atgtggaaaactcaaaaacaacttgctccacgaaaaaggaaaaatcaaatcacttctctt
gtggagaacgctcttgataaatgcaccttgggaaattacagttccaacacgcgagattct
ctctcgtcctggatgcctgactgcataggttttaatcttatcgaggctgttttgtgccac
atatgtcgtaaagaacgacctggtgcagttttagtattcctgactggatgggaggatatt
agcagtttgagggaccaactgagagctcatccacttctaggagatccaaacagggttttg
cttttgacatgccatggttcaatggcaacatccgaacagagactcatatttgagaaacct
gctcagaatatccgtaaagtagttctcgccactaatatggcagaggcaagcatcacaata
aatgatgttgtttttgttattgactgtggaaaagcaaaagaaaccacgtatgatgcatta
aataatacaccttgtctgttaccttcatggatatcacaggcatctgcccggcaaagaagg
ggtcgtgcaggccgtgttcaaccaggaaaatgttatcatctttacccaaaatgtgttttt
acagcattttctgagtaccaacttcctgaacttttgagaactccattaaattccctctgc
cttcaaataaaaagtttgcaggttccaagtgtaggggaattcttgtcatctgctctacaa
ccaccaaaacccttggctgtacaaaatgccattgattttttaaagatgatcggggcattt
gatgagaaggaaaacttgacaaacctcggaaaatttttgtcaatgctccccgttgaccct
aagctaggaaaaatgctgattatgggtgctatctttcattgctttgatcctatccttact
atagtttccggccttagtgtcagagatccttttcttctgcctcaggacaaaaaagactta
gccgggatagcgaagggtagattttctgcgaaggactacagtgatcatatggcgcttgtt
cgtgcttatgagggatggaaagatgcagaaagagaagggtcttcgtatgagtactgctgg
aggaatttcctctctatgcaaacacttcaagcaatcgattcacttagaagacagtttagc
ttcattttaaaggatgcaggattagttgatttagatggcagcacaagtaataagttaagc
cacaaccagtctcttgttcgtgcaatcatttgttctggtctctttcctggcgtagcatct
gttgtgcacagagagacatccatgtccttcaaaaccatggatgatggccaggtcctgctg
tatgcgaattctgtaaatgcgcgtttcaatacaattcccttcccatggctggtctttggc
gagaaagtgaaggtcaatacagttttcttacgtgattctactggcatatctgattcgatg
ctgattctttttggtggagcagtaaatcgtggtgtacaggctggtcatttgaaaatgtta
aatggctacgttgaattctttatggattctagtttggcggactgctatttgcaactcaag
gaagaacttgataagcttattgaaaacaaacttgagaaccccggacttgatattctcaag
gaaggaaagtaccttgttctttctgttcaagagttggtgtcgggcgaccaatgcgaaggg
agatttgtgtttggtcgaaacagtaagaagcaagcagtgtctaaggacgacagattcaca
aaggatggtaccaacccaaagagcttgctacaaaccttgctaatgagggcaggacattcc
cctccaaagtacaaaacgaagcacctcaagacaaatgagtttagggcactagtagagttt
aagggcatgcaatttgtgggtaagcctaagaaaaacaagcagcttgccgagagggatgct
gctatagaggctctggcctggttgacacaaacctctgacaacaatgcgaattcagacgac
gactctcctattgatgtcaccgacaacatgctaaaacttcttggaaaacgaaggcggtct
aaacgtcgttga
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