Cucumis melo (muskmelon): 103489678
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Entry
103489678 CDS
T03195
Name
(RefSeq) probable RNA helicase SDE3 isoform X2
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
cmo
Cucumis melo (muskmelon)
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103489678
03036 Chromosome and associated proteins [BR:
cmo03036
]
103489678
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
103489678
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103489678
Chromosome and associated proteins [BR:
cmo03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
103489678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_22
DEAD
AAA_16
SLFN-g3_helicase
Helicase_RecD
AAA
Mov-10_helical
AAA_5
Motif
Other DBs
NCBI-GeneID:
103489678
NCBI-ProteinID:
XP_008447161
UniProt:
A0A1S3BHD9
LinkDB
All DBs
Position
1:complement(21463465..21468443)
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AA seq
886 aa
AA seq
DB search
MGTVGDNWGDECSVIKDKGEISYIDYEDDQSVCSYNPVEEGPIIVSVPFAFVNGKPRSVF
VGETVADAITIKNTTDESVDLWAVNIYASNPENSFTLSLMEPPDPNADIESVQAFLESFS
LEDRMIHADDTLTIWLSCKPKEIGLHTTIVHFDLGNERIERVSFLLADDKISQSLVPRKP
YSRDRRRRQEAVDSYIPGTRPTRTRGRGFKNFLLQYEIPSKIKDELSRKEIPSAVREGLK
RDTYVPYFMTLLNMEEIQLEEDMRAYDMELVTMKRKGHNFLSLEVPGLAERRPSLVHGDY
ILVKMPFGHTNDSVSAYQGYIHHVEADEVYLKFAPEFHINHRDGNQYNVQFTYNRINMRR
FYQAVDAADSLAKEFLFPYEFSERRYINTTPLVPLTQNINEEQIRCVQMILGCKGTPPYL
VHGPPGTGKTQTLVEAILQLYMTRKNARMLVCAPSNSAADHILEKLLNQEGVEIRDNDVF
RLNASTRQYDEIKPDILPYCFFDEQIFRCPPRNALVRYRIVVSTYMSTSLLYAEDIKRGH
FSHIFLDEAGQASEPESIIPISNLCLRKTVVVLAGDPMQLGPVIYSKEAEIYGLGKSYLE
RLFECEYYSTGDENYVIKLLRNYRCHPDILHLPSTLFYGGELIACKDEKSLLMDTADILK
VLPNKEFPVLFFGIQGCDEREGNNPSWFNRIEVSKVVEIVRKLTDGGNLTEENIGIITPY
RQQVLKIRKAFDSLDMIDIKVGSVEQFQGQERQVIIVSTVRSTIKHNEFDKTYCLGFLSN
PRRFNVAVTRAISLLVIIGNPHIINQDVYWNKLLWQCVDKDSYQGCPLPERQDLTDEVQL
CTNREGQSSGFEEAGQDQELQEPAVAPETEFSQPVVDEAEWSDGWK
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggttggtgataattggggagacgagtgttctgtcattaaagacaagggagag
atttcctatattgactacgaagatgatcaatctgtttgcagctacaatcctgttgaggaa
ggtccgattattgtttctgtgccatttgcttttgtgaatggcaaacctcgatcagttttt
gtcggagaaacagtggctgatgcgattactatcaagaacaccactgatgaatcagtggac
ctatgggcagttaatatttatgcatctaatcctgaaaactcatttacactctctttaatg
gagcccccagatccaaatgctgacatcgaaagtgtacaagctttcctggagtctttttca
ttggaggatagaatgatccatgcagatgacactcttactatatggctgtcttgcaaacca
aaggaaattggattgcacacgactattgtgcattttgatcttggcaatgaaagaatagaa
cgagtatcttttctgttagcagatgataagatttctcagtcgttggtacctaggaagccg
tattcaagagataggagaaggaggcaggaggcagtagattcgtatattcctggcacacgt
cctactagaacacggggtcggggattcaaaaatttccttctccaatacgaaatccctagt
aaaattaaagatgaacttagcagaaaggagatccctagtgctgttcgagaaggacttaaa
agagatacttacgttccctatttcatgacattgttgaacatggaagaaatacaattggag
gaagacatgagagcttatgatatggagcttgttactatgaaaagaaagggacataacttt
ttgtccctcgaggttccagggcttgctgagaggaggccttcacttgtccatggagactat
atccttgtcaagatgccttttggacatacaaatgactcagtttcggcttatcagggatat
attcatcacgtcgaagctgatgaagtttacctaaaatttgccccagaatttcacatcaac
cacagagatggcaatcagtataacgtccagtttacctataacagaattaacatgaggagg
ttctatcaggctgttgatgctgcagacagtttggcaaaggagtttctgtttccatatgag
ttttcggaaagaagatatatcaatactactccactggtgcctttaactcagaacatcaac
gaggaacagattcgttgtgttcagatgatccttggttgcaaaggcacaccaccttattta
gttcatggacctccaggtactggtaagactcaaaccctggtggaagctatcctccaactc
tacatgacacgaaagaatgctcggatgcttgtttgtgctccttcaaatagtgctgcagac
cacatactggagaagctcctcaatcaggagggtgttgaaattcgcgataatgatgttttc
aggctaaatgcaagcacacgacaatatgacgaaatcaagcctgacattcttccctactgc
ttctttgatgaacaaattttcagatgtcctccacgcaatgccttagtgcgctataggatt
gttgtttcaacttatatgagtacttcccttctttatgctgaggatatcaagcgtggtcac
ttctctcacattttcttagatgaggctggccaagcttcagagccagaatccataattccg
atatccaacctctgtctaaggaaaacagttgtcgttcttgctggcgaccccatgcaatta
ggcccagtgatttactccaaggaagcagaaatttatggattaggtaaatcatatttggaa
aggctttttgaatgtgaatattacagcactggggatgaaaactatgtaatcaagttgttg
agaaactatagatgtcatccggatatcttgcatcttccttctacattgttctatggcggt
gaactaattgcatgtaaagatgagaagagtcttctcatggatacagcagatattcttaaa
gtacttcctaataaagagtttcctgttcttttctttggtatccaaggctgtgatgagagg
gaaggcaacaatccatcatggtttaaccgaattgaggtaagcaaggtggttgagattgta
aggaaactgactgatggtggaaatctgaccgaggaaaatattgggatcataacaccctat
cggcagcaagtgctcaaaattaggaaagcctttgatagtctggatatgattgatataaag
gttggtagtgtagaacaatttcaaggacaagagaggcaagtgattattgtttctactgtt
cgatcaacaattaaacataatgagtttgacaaaacctactgtttggggtttttgagtaat
ccaagaaggtttaatgtggctgttactcgggctatatctcttctggtcataattggcaat
ccccatataatcaatcaggatgtttattggaacaagctgttatggcagtgtgttgacaaa
gattcatatcaaggttgccccctccctgaaaggcaggacctcacagatgaggtacaactg
tgcactaaccgagagggacaaagttcaggatttgaagaagcaggccaggatcaagagctg
caggagccggcagtggcaccagagacggaattttcccaaccagttgttgatgaagctgaa
tggtctgatgggtggaagtaa
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