Cucumis melo (muskmelon): 103489800
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Entry
103489800 CDS
T03195
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103489800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmo03021
]
103489800
Transcription machinery [BR:
cmo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
103489800
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
Ribosomal_S27e
Motif
Other DBs
NCBI-GeneID:
103489800
NCBI-ProteinID:
XP_016900419
UniProt:
A0A1S4DWR2
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All DBs
Position
4:11849000..11855290
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AA seq
538 aa
AA seq
DB search
MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYN
VRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGLQGRQLTDALREKYKNRPWLL
EDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKM
KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKETVGTSGRGRRKTTGDENEGNVSDRG
EEDEEEEAARKNRLGLSKKGGGDDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDET
TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG
EDDEDDDDVDEDTGGTPVLPSKQKDTVKEEAAANSPSKPTPSGSAKGTPSTAKTAKGKRK
NGEDVKPSSAPPKKMKTETELKPTDEGVPTSKSTASKGAPASVKTEPSSHSGPVTEEEIR
AVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgatttgctcctgaagccatcgtgcagtggatgtggatccacgacggagttg
tatgggagcaattgcaagcacatgacattgtgtttgacctgtggcaaaactatggcggag
aacaagggcaaatgctatgattgtggggctactgtaactcgcttaataagagaatacaat
gttcgagcaagtgcaagtagcgacaagaactacttcattggtaggttcatgagtgggctg
ccgaacttttcgaagaagagaaatgctgagaataaatggtctctttacaaggaaggtcta
caaggacgccaacttacggatgcccttcgggaaaagtacaagaatagaccttggctgttg
gaagatgaaacaggccaatttcaattccaaggtcatcttgagggctcacaatcagccaca
tactacttgcttgtattgcagggaaaggaatttactgccattcctgcaggttcctggtac
aacttcaataaagtggcacagtataagcaacttacattggaggaggcagaagaaaaaatg
aagaatcgaaagaagacggcagatggatatgaaagatggatgatgaaagctgcaagtaat
ggtcctgctgcatttggcgaagttgagaagtttgatgacaaagaaactgttggtactagt
ggtaggggacggagaaaaactacgggtgatgagaatgaaggcaacgtctcggatagggga
gaagaagatgaagaagaagaggcagcaaggaagaacagattgggactcagtaaaaagggc
ggtggtgatgacgatgatgaggaaggtcctaggggtggtgaccatgatttggatgatgat
gatattgagaaaggggatgattgggagcacgaagagatttttactgatgatgatgaaact
actgctccagatcgtgaagaaagggaggatttagcccctgaagttcctgcacctccagaa
atcaaacaggatgaagaagatgaggatgaagaaaatgaaggggaaggggggctgagcaaa
tctgggaaagagttgaagaaattgcttaggcgtactgggggtcttaatgattcagatgga
gaggatgacgaggatgacgacgatgtggacgaggatactggtggcactcctgtcttacct
tcgaagcagaaggatacagttaaagaagaagctgcagccaacagtccctcaaaaccaaca
ccttctggatctgctaagggaaccccttctactgcgaaaacggcaaaggggaaaaggaaa
aatggtgaggatgtgaaaccatccagtgcacctccaaagaaaatgaaaacagagacggaa
ttgaagcctacagatgaaggtgtgcctacttctaaaagtacggcctcaaaaggtgcaccg
gcatcagtcaaaactgaaccatcatcgcattctggacctgttactgaggaagaaattagg
gctgtcttgcggcaaaggacacctgtaactacacaggatcttgttgcaaaattcaaagca
agattgcgaactccagaggacaaaaatgcttttgctgaaatactacggagaatttcaagg
attcaaaagacaaatggaggtccgagttacgttgtgttgagaaaacctgaagactag
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