Cucumis melo (muskmelon): 103489861
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Entry
103489861 CDS
T03195
Name
(RefSeq) protein CHROMATIN REMODELING 8 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
103489861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cmo03036
]
103489861
03400 DNA repair and recombination proteins [BR:
cmo03400
]
103489861
Chromosome and associated proteins [BR:
cmo03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
103489861
DNA repair and recombination proteins [BR:
cmo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
103489861
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
HDA2-3
ResIII
WHD_SOWAH
Motif
Other DBs
NCBI-GeneID:
103489861
NCBI-ProteinID:
XP_008447405
UniProt:
A0A1S3BHC6
LinkDB
All DBs
Position
4:13739541..13746851
Genome browser
AA seq
1223 aa
AA seq
DB search
MEEVEDRIFLNSLGVTSANPEDIERDLLNEAKKKSENGLEVGGIEEENVCDKLDTTDSPS
ASHVQLYQKLRAVEYEIDAVASTVGPGKKLERNEQHSCISTDSQEHAREEDGVSASGDGL
QHALAVDRLRSLKKTQQQLKKELFHLNDKHAKTILEIVKDRSKPKRKSKEVKKSGNDGGK
RLKVVSFDEDNDFDAALDAATMGFVETERDELVRKGILTPFHKLKGFERRLQSLGQSSLQ
NAGGSRGEVKEEEEENDDFASDSVARALRSMSVAAQARPTTKLLDPDALPKLDPPTRPFY
RLKTPAKVPLSAEDKLTTKTKSKKTRRPLPDKKYRKQIAMEERDKEAAENMSDGLATSSS
EREDSGDLEEDVNELSFVTLEGGLKIPQSIFDQLFDYQKVGVQWLWELHCQRAGGIIGDE
MGLGKTVQVLAFLGALHFSNIYKPSIIVCPVTLVRQWKREARKWCPGLLAEILHDSAHDP
TYKNMREKSDGSDESEDSGESDYRKNSQAKGTKRWDALINRVLMSESGLLITTYEQLRLL
GDKLLDVEWGCAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGSPIQNKLKELWSLFDF
VFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVN
AHLPKKTEHVLFCSLTSEQRSVYRAFLASSEVESILDGNRNSLSGIDVMRKICNHPDLLE
REHAFQNPDYGNPERSGKMKVVEQVLKVWKEQGHRVLLFAQTQQMLDILEKFLVGGGYSY
RRMDGGTPVKQRMALIDEFNNSCEVFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDM
QARERAWRIGQQRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMK
DLFTLNEDGMDGSTETSNIFGALTDSVNVVGVQKNEKDGQKSCSGSVSFADSADENLCKS
ETETSGRNVSVEGQGGGADEDTSILKSLFDAHGIHSAVNHDIIINADDGEKIRLEEQASQ
VARRAAEALRQSRILRSNESFSVPTWTGKAGTAGAPSSVRRKFGSTINSLVTNNSKSSNE
VSKNGTIHLNGHAAGTSCGKALSSADLLAKIRGNQERAISAGLERQSTPSTSSTNNVRTV
GVSYSRSSSKNLSVVQPEVLIRQICTFIHQRGGTADSASIVEHFKDRIPSNDLPLFKNLL
KEIAMLEKSPSGSFWVLKAEYKQ
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtggaggatcggatttttctcaacagcttgggtgtaacgtcagctaatcct
gaggatatagagcgggacttgttaaatgaggcaaaaaagaagagtgagaatggtcttgaa
gttggagggattgaagaagagaatgtttgtgataagttagatactactgattcaccttca
gccagtcatgtgcagctctatcagaagcttagggctgtagaatatgagatagatgctgtt
gcatcaacagtgggaccagggaagaaacttgaaaggaatgaacaacattcttgtatcagc
accgactcccaggaacatgcgcgtgaagaggatggtgtctctgcttctggagatggcctt
cagcatgccctagcagttgacaggctaagaagcctgaagaaaacccaacagcagttgaag
aaagaactttttcatttgaacgataagcatgccaagacaatattggagattgtcaaggac
agatcaaaacctaagagaaagtctaaagaggttaagaaatcaggtaacgatggagggaag
aggttgaaagttgtgtcatttgatgaagataatgattttgacgcagctttggatgcagcc
accatgggctttgttgaaacagaaagagatgaattggtgcggaagggaattttaacacca
tttcacaagctaaagggctttgaacgccgtcttcagagtctggggcaatctagtcttcag
aatgctggaggatcaaggggtgaagtaaaggaggaagaagaggaaaatgatgattttgct
tctgacagcgttgctagagccctccggtcaatgtcagtggctgcacaagctcgaccaacc
actaaactgcttgatccagatgctttgccaaagcttgatccaccaacccgtcctttctac
aggttaaaaacacctgcaaaggttcccctatctgcagaagacaaacttacaacgaaaaca
aaatccaagaagactagacggcctttaccagacaaaaaatatagaaaacaaattgctatg
gaggaaagggacaaggaagctgctgagaatatgtcagatggtttggctacatcaagttct
gaaagagaagattcgggagatttagaagaagatgttaacgaactttcttttgtaacactt
gaaggtgggctgaaaattcctcagagtatatttgatcaactttttgattaccaaaaagtt
ggggtgcagtggttatgggaattgcactgccaaagggcaggtggaattattggagatgag
atgggccttggaaagacagtccaggtcttggcctttttaggtgcattgcatttcagtaac
atttataaaccaagcatcattgtctgccctgttacactagttagacagtggaagagggag
gcacggaaatggtgcccaggacttttggcagaaatcctacatgattctgcccatgatccc
acttacaaaaatatgcgagaaaaatctgatggaagtgatgaaagtgaagattcaggggaa
agtgactataggaaaaactcacaggctaaaggcactaaaagatgggatgccttgataaac
cgtgttttgatgtcagaatcgggtttgttgattaccacttacgaacaactaagactgtta
ggtgataaattgcttgacgttgagtggggttgtgcagtcctggatgaagggcatcgcatt
cgaaatccaaatgctgaagtcactttagtttgcaagcagctacagacagttcatcgcata
ataatgactggctctccaattcagaacaaattgaaagagttgtggtccttgtttgatttt
gttttccctgggaagctgggggtgttgcctgtatttgaagcagaatttgcagttcctata
tctgtgggtggctatgctaatgcctctcctttgcaagtatcaactgcatatcggtgtgct
gtcgtccttcgtgacttaattatgccctatcttcttagaaggatgaaagccgatgtaaat
gctcatttgcccaagaagactgaacacgtcctcttctgcagccttacttctgaacaacgt
tctgtctatagagcattccttgcaagctctgaagtggaaagtattttggatggaaataga
aattctctttctggaattgatgtaatgcgtaaaatttgcaaccacccagatctgctcgag
agagaacacgctttccagaatcctgattatgggaatcctgaacgtagtggaaaaatgaag
gtggttgagcaagtgctgaaggtctggaaggagcaaggtcaccgtgttcttctttttgct
cagacccaacagatgcttgatattttagagaaatttctggttggaggtggttatagttat
aggaggatggatggtggaactcctgtcaaacagagaatggccttgattgatgaattcaat
aattcctgtgaggtgtttgtttttattttaacaaccaaggttggcggtctgggaaccaac
ctaactggagcagatagagtgataatctttgaccctgattggaatccgtcaactgacatg
caggctagggagcgtgcttggcgtatcggtcaacagcgggatgtaacagtgtatagattg
ataactcgtggaactatagaggagaaagtgtaccatcgacagatatataagcattttctc
actaataagatattaaagaacccacagcagagaaggttctttaaggctagagacatgaag
gatctctttacactgaacgaggatgggatggatggatcaacagaaacttcaaatattttc
ggtgcattgactgatagtgtaaatgttgttggtgttcagaaaaatgagaaggatgggcaa
aaatcttgcagtggctcagtatcgtttgcagattctgctgacgaaaacctatgcaaatca
gagactgaaacttctggaaggaatgtttctgtcgagggccagggtggtggagcagacgag
gacacaagtatcttgaagagcctttttgatgcacatggtattcatagcgctgttaatcat
gatatcattattaatgctgacgatggggagaaaatacggctagaggagcaagcttctcaa
gttgcacgtagagcagccgaggcattgcgccagtctagaattctgcggagtaacgagagc
ttctcagttccaacatggactggaaaagctggaactgctggtgcaccatcgtctgttcgt
cggaagtttggttcaaccattaactctctggtaaccaacaattccaaatcctcgaatgaa
gtatctaaaaatggaactatccatttaaatggccatgcagctggcacatcttgtggaaag
gccttatcctcggcagacctgctggctaaaattcgaggaaaccaagaaagagcaatcagc
gctgggcttgaacgtcaatcaactccttcaactagttcaacaaacaatgtaagaactgtt
ggtgtcagttattctcggtcgtcgtcgaagaacttatctgtagtacaacccgaagtattg
attcgtcagatatgtacatttattcatcaaagaggtggaacagctgattcagccagtatt
gtagagcattttaaggacaggataccctcaaacgatttgccgttgtttaagaatttactg
aaagagatagcgatgttagagaaaagccccagtggatcattctgggttcttaaggcagag
tataaacagtaa
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