Cucumis melo (muskmelon): 103491038
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Entry
103491038 CDS
T03195
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103491038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103491038
Enzymes [BR:
cmo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103491038
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103491038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
103491038
NCBI-ProteinID:
XP_008449056
UniProt:
A0A1S3BKK0
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All DBs
Position
6:31630024..31633875
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AA seq
702 aa
AA seq
DB search
MHPSHPLWARRLFCFIRTTNYSSAAVTAPATASNSSFPLKNVTKSNFEAALSELRSHVRA
ADFVAVDLEMTGITSAPWRDLLEFDRFDVRYLNVKDSAEKFAVVQFGVCPFRWDSAKKSF
VAHPHNFFIFPRHEIEVDGPSSEFLCRTTSLEFLAKYQFDFNACIYEGISYLSRAHEDAA
RKRLNFAYGDEMLDASSNVTNVRDKKRVGIADVLFRERMKNRLHEWRDRLLSERNMEFQG
QEGSNDHKRQFQTIFFKTRPALTLSDFTSHQIKLIQLVIKKHFEDLCFVVVNDGNADLQQ
FVVYVDSRDDKELLMQEVNRDQNKAAETKIQSAIGFRHVIDLLSSEKKLIVGHNCFLDML
HIHRKFIGSLPSTAEEFVSSFGKHFPYVMDTKILLNDNYILRRRMNKSNTSLSSAFGSLC
PHIAFSSLRVNALNDCVQVEVQVDDLRSSKWNSGDKHEAGYDAFMTGCVFAQACNLMGID
FIDCSTSKNLVDNEILQKHINRLYLNWASGDIIDLSTGNQVTESFKTRKHRVRVSFENIV
LIWGFSTNLTARKIKACISKVFGQANVSSVNHLDESAVFVQFTKPEMVSEFLNLKEKLEK
RDDPISVLHPLTELFDARATHAAGYEAYKKICSSPMSKLLFSDQAEAVGINRKTMLIKSE
AKRSKIDQAVDMLDETTEIQGTEGEANDLSSTNYQSLRSSSM
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgcatccatctcatcctctttgggcgcggcggcttttttgcttcatcagaactacaaac
tactcctccgccgccgttactgctccggccaccgcctcgaactccagttttcccctcaag
aatgtgaccaagtcgaacttcgaagctgcgttatcggaacttcgaagccatgtccgagct
gcggacttcgtcgccgtcgacctcgaaatgaccggcatcaccagcgccccttggcgcgac
ttgttggagttcgatcgctttgatgttcgttacctcaacgtcaaggactctgctgagaag
ttcgccgttgttcaattcggcgtctgcccgttccgttgggactccgccaaaaagtcattc
gtcgctcacccgcataacttttttattttcccacgccatgaaattgaagtcgatggccct
tcttccgagttcctctgccggacaacctccctggaattcttagctaaataccaatttgat
ttcaacgcttgtatatatgaaggaatatcttatttgtccagagcacatgaagatgcagca
cgtaaacgtttgaattttgcatatggggatgaaatgttagatgcatcttctaatgtgacc
aatgttagggataagaagagggtcggcattgctgatgttttattcagagaaagaatgaaa
aacagattacacgaatggcgggacagattactatctgaaagaaacatggagtttcaaggc
caagaagggtcaaatgatcacaaacgacaatttcaaaccattttcttcaagacgcgacct
gctcttactttgagtgattttacctctcatcagataaaattgattcagctggtaattaag
aagcattttgaggatctttgttttgttgtcgtgaatgatggtaatgcagatctacaacag
tttgtcgtgtacgtggattctagagacgataaagagctgctcatgcaagaggtaaaccgt
gaccagaataaagcagctgaaacgaagatacaatctgcaatagggtttcgtcatgttatt
gatctcctttcatcggaaaagaagctaattgttggtcataattgtttccttgatatgctt
cacatacacagaaaatttattggctctcttccttcaaccgcagaagaatttgtctcttct
tttggaaaacactttccatacgtcatggataccaaaattctcttaaatgacaattatatt
cttcgacgacggatgaataagtccaacacatctctatcctccgcctttggctcattatgc
ccgcatattgccttcagctctctgagggttaatgccttgaacgattgtgtgcaagtggag
gttcaagtagatgatctaagatcctccaaatggaactccggagataaacatgaagctggg
tacgatgcttttatgacaggatgtgtatttgctcaagcatgtaatcttatgggaattgat
tttatagattgttcaacttccaaaaatttggttgacaatgagatattgcaaaagcacatc
aatcgtctgtatttgaattgggccagtggagatattattgatctaagcactggtaaccaa
gtgaccgagtctttcaagactagaaagcatcgagtgcgagtatcgtttgagaacattgtt
ctaatctggggattttctaccaaccttactgcaagaaagatcaaagcatgcatctctaaa
gtcttcggccaggccaatgtctctagtgtcaaccatttagatgaaagtgctgtgtttgtg
cagtttacaaagccagaaatggtttccgaatttctcaacttaaaggagaagttggagaag
cgtgatgatccaatatcagttttgcatcctctcactgaacttttcgatgctagggctact
catgctgcaggctatgaagcatacaagaaaatttgcagctctcccatgtcgaaactcttg
ttttctgatcaggcagaggcagttgggattaaccgaaagacgatgttgataaaatctgag
gcaaaaaggagcaaaattgaccaagctgttgacatgttggatgagactactgaaatacag
ggaacggagggggaagcaaatgatctaagcagcactaactaccagagtttacgatcttct
tcaatgtaa
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