Cucumis melo (muskmelon): 103491976
Help
Entry
103491976 CDS
T03195
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103491976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103491976
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
103491976
mRNA cycle factors
Common to processing body (P body) and stress granule
103491976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
103491976
NCBI-ProteinID:
XP_016900893
UniProt:
A0A1S4DY43
LinkDB
All DBs
Position
2:complement(7701806..7708913)
Genome browser
AA seq
972 aa
AA seq
DB search
MAKMSASASSSWERAQRLYEKNIELENRRRRSAQARIPSDPNAWQQIRENYEAIILEDYA
FSEQHNIEYALWQLHYKRIEELRGHLTAGSNNAQGVPTRPDRISKIRLQFKTFLSEATGF
YHDLILKIRAKYGLPLGFFSEDADNRMATDKDGKKSADMKKGLISCHRCLIYLGDLARYK
GSYGDVDSKNREYTAASSYYLQAASLWPSSGNPHHQLAILASYSGDELVAVYRYFRSLAV
DSPFSTARDNLIVAFEKNRHSHSQLSGTAKTPPKKESPIRFSGKGRKGEVKLATKDSSTE
PPKESAVSPQDLFKSFCIRFVRLNGILFTRTSLETFTEVLSLVISNFSELLACGPEEELL
FGTDTAENSLIIVRIVAILIFTVHNVNKETEGQTYSEIVQRAVLIQNAHLAVFELMGSIL
DRCSQLRDPLSSFFLPGLLVFVEWLACCPEIAANGEVDDKQATARSKFWNLCISFFNKLL
SSGSVSLDDDEDETCFFNLSKYEEGETENRLALWEDLELRGFLPLLPAQTVLDFSRKHSG
SDGNKEKVARIKRILAAGKALASVVKIDQEPIYYNSKMKMFCTGVEPQVPNDFFVPSSSS
MIPSSGSAIQETQVEKTNNLAVGKPSSQLVLEGEEEDEVIVFKPLVAEKRIELADSYRSG
YEGLLLGRNSSGGDLRSYGGVMTSSDDVYQSNGFESSSQAPVTAANINTLHWQTIQPTAS
KWPLEQEACLVDSLQSLRLLENGNGMKTDLQNDVTMFNPAAHMMPIKQAVNNDVFYSDKK
PIGALVQSRNDVPASFGGIIDPMTTGAFSSLQTGLRKNPVGRPVRHLGPPPGFNHVPTKH
ANESLPGSEFRSENQMMDDYSWLDGYQLPSSTKDSANAVHLTSHMTAQQIGVSNMLSATI
NFPFPGKQVPNVQSPIGKQKGWPDFQVLEQLRQHNEQHLQPHQQLVNGGNQHFSSLPEQY
PGQSIWTGRYFM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaatgtctgcttccgcctcttcatcgtgggagcgtgctcaacgcctttatgag
aagaatattgagttggaaaatcgacgtagaaggtcagctcaggctcgaattccatcagat
cccaatgcatggcaacaaatacgtgaaaattatgaagcaataatcctcgaggattatgct
ttctctgaacagcacaatattgaatatgctctgtggcagttgcattacaagcgaattgag
gagcttaggggacatttgactgctggttctaacaatgctcaaggcgtgcctacaaggcct
gacagaatttcaaaaataagattgcagttcaaaacatttctttctgaagctactggattt
taccatgatttaatattgaaaatcagagcaaagtatgggctccctttgggttttttctcg
gaggatgcagacaaccgtatggctacagataaagatggaaagaagtctgccgacatgaag
aaaggtctcatttcttgtcatcgttgtttgatatacttgggtgatcttgctcgctacaaa
gggtcatacggggatgtcgattcaaaaaatcgggagtatactgcagcttcaagttactat
ctgcaagcagcatcactttggccatcaagtggcaatcctcatcatcagcttgctatatta
gcttcatactcaggagatgagttggttgctgtttatcgatatttccgtagtttggctgtc
gattccccattttctactgccagagataatttgattgttgcgtttgagaagaaccgtcat
agccattcccagctgtcagggacagctaaaactcctccgaagaaggaatcacctattcga
tttagtggaaaaggacggaagggagaagtaaagcttgcaaccaaagattctagcactgaa
cccccaaaggagagtgcggtatctccacaagatctttttaaatccttttgcattagattt
gttcgtctaaatggaattcttttcacacgcacaagcctagagacctttacagaggttctc
tcattggttatcagtaatttctccgaacttttggcttgtggacctgaagaggaactgctt
tttggaactgatactgctgagaacagtctcatcatagttagaattgttgcaattcttata
ttcacggtccacaatgtgaataaagaaactgaaggacagacgtattcagaaattgtacaa
cgggctgtgttgatccagaatgcacatcttgcagtctttgagttgatgggctctattcta
gatagatgttcccagttgcgtgatcctttgtcaagtttttttctgcctggccttctagtt
tttgttgaatggttggcatgttgtccagaaattgcagcaaacggtgaagtggatgataaa
caggcaactgctagatcaaaattttggaacctttgcatctccttcttcaataagcttttg
tcgagtggttctgtgtctttagatgatgatgaggatgagacatgcttttttaacctcagt
aaatacgaagagggcgaaactgaaaatcggcttgcattgtgggaggatctcgaattaagg
ggattcttgccacttcttcctgcacagacggtattggatttttcaaggaagcattctgga
agtgatggcaacaaagagaaggttgctcgcattaaaaggattctggctgcggggaaggct
ttagcaagtgtagtcaagattgatcaggaaccaatatactacaattcaaagatgaaaatg
ttttgtaccggtgttgaacctcaagtgccaaatgattttttcgttccatcgtcttctagc
atgattcctagttcaggcagtgcaattcaagaaactcaagtggagaaaacaaacaatttg
gctgtcggtaagccaagttcacagctagttttggaaggggaagaggaggatgaagtaatt
gtcttcaagcctttagttgctgagaagcgaattgaacttgctgattcataccggtcaggt
tatgagggtttgctacttggaagaaattcgtctggaggtgatctgagatcctatggtggt
gtgatgacctcttccgatgatgtttaccaatcaaatggttttgagtcgagttctcaagca
cctgtgactgctgccaatattaacaccctccattggcaaacaattcagccgactgcatcc
aaatggccacttgaacaagaagcttgtcttgttgacagcttgcaaagtttgaggttattg
gagaatgggaatgggatgaaaactgatcttcagaatgatgtaaccatgttcaatcctgca
gctcacatgatgcctatcaagcaagctgttaataatgatgttttttacagtgacaaaaag
cccataggagctcttgtacaatctaggaatgatgtgcctgcctcctttggaggcatcatt
gacccaatgactacaggtgcattttctagccttcaaacagggttgaggaaaaacccagtt
ggtcgaccagttaggcatcttggacctcctcctggattcaaccatgttccaactaagcat
gctaatgaatcccttcctggttcggagtttagaagtgagaatcagatgatggatgattat
agctggttggatggatatcagctgccctcttctacaaaagactctgctaatgctgtgcat
ctcacctctcatatgactgctcagcaaattggtgttagtaatatgttgagtgcaacaatc
aacttcccttttcctggaaaacaagttccaaatgtgcagtctccaataggaaaacagaaa
ggctggcctgattttcaggtgcttgagcagctaagacaacacaatgaacaacatttgcag
cctcatcaacagcttgtgaatggtggtaaccaacactttagttcgctgcctgagcaatat
ccagggcagtctatatggacaggtcgttacttcatgtga
DBGET
integrated database retrieval system
