Cucumis melo (muskmelon): 103492231
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Entry
103492231 CDS
T03195
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103492231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103492231
03041 Spliceosome [BR:
cmo03041
]
103492231
03009 Ribosome biogenesis [BR:
cmo03009
]
103492231
03016 Transfer RNA biogenesis [BR:
cmo03016
]
103492231
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103492231
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103492231
Spliceosome [BR:
cmo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103492231
Complex C
U4/U6.U5 tri-SnRNP related factors
103492231
Ribosome biogenesis [BR:
cmo03009
]
Eukaryotic type
Pre-60S particles
Helicases
103492231
Transfer RNA biogenesis [BR:
cmo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103492231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
HMMR_N
Motif
Other DBs
NCBI-GeneID:
103492231
NCBI-ProteinID:
XP_008450745
UniProt:
A0A1S3BQY6
LinkDB
All DBs
Position
5:complement(21108047..21156644)
Genome browser
AA seq
1014 aa
AA seq
DB search
MEESPTLGKRKDPEEESAVAETGNNQETSSNKRPKESKNLEGEKATPIQETVSNRRSFVR
TCVHEVAVPVGYSSTKDESVHGTLPDPVYNGTMAKTYPFTLDPFQQVSVSCLERNESILV
SAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELSQEFKDVGLMTGDVTLS
PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMRDRERGVVWEESIIFLPPAIKM
VFLSATMSNATEFAEWICNIHKQPCHVVYTDFRPTPLQHYVFPAGGNGLYLVVDENEQFR
EDNFLKLQDTFAKQKQIVGRRTANGKSSGRIAKGGSASGGSDIYKIVKMIMERNFQPVIV
FSFSRRECEQHAMSMSKLDFNTQEEKDTVEHIFKNAILCLNEEDRELPAIELMLPLLQRG
IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAFKKWDGDSHRF
IGSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMGTIKEMILGKPAPLVSTFRLSYYSIL
NLMSRAEGQFTAEHVIRHSFHQFQHEKALPDIGKRVSKLEEEAATLEASGEAEVAEYHKL
KLDIAQLEKKMMSEITRPERVLYFLLPGRLVKVREGGTDWGWGVVVNVVKKPSAGLGILP
SRGGAYIVDTLLQCSPCLSENSSRPKPCPPRPGEKGEMHVVPVQLPLISALSKLRISIPS
DLRPVEARESILLALEELGTRFAQGFPKLNPVKDMNIEDPEIVELVKQIEELERKLYAHP
LHKSREVDQMKCFQRKAEVNHEIQILKTKMRDSQLQKFRDELKNRSRVLKKLGHIDADGV
VQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQIAALASCFIPGDKSNEQIQLRTELA
RPLQQLQDSARRIAEIQHECKLDINVEEYVESTVRPYLMDVIYCWSKGASFSEVIQMTDI
FEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASDSLRRGIMFANSLYL
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctcctacacttgggaagcggaaagaccctgaagaagaatcagctgtcgca
gaaactggcaacaaccaagaaacgagctccaataagcggcctaaagaatcgaaaaaccta
gaaggtgagaaggccactccaattcaggaaactgtctccaaccgacgcagttttgtgcgg
acttgtgttcatgaagtagcggttccggttgggtactcttctaccaaagatgagtcggtt
catggaaccctaccggatccagtttacaatggtacaatggcaaaaacgtacccgtttacg
ctcgacccatttcagcaggtatcggtttcttgcttagaacggaatgaatctattttggtt
tctgctcatacttcagctggaaaaactgcggttgctgaatatgccattgcaatggctttt
agagacaaacagagggttatatatacttccccacttaaggctttgagtaatcaaaagtat
agggaattgagccaagagttcaaagacgtgggattgatgactggagatgtcactctttcg
cctaatgctagttgtttagtaatgacgacggagatacttagggggatgctttacaggggt
tcggaagttttgaaggaagtagcatgggtaatttttgatgaaattcactatatgagagat
agggaaagaggtgttgtttgggaagaaagtataatatttttaccaccggctatcaaaatg
gtcttcctttctgcaacaatgtccaatgccacagagtttgctgagtggatatgtaatata
cacaagcagccttgtcatgtggtgtacactgatttccgaccaactcccttgcaacattat
gtttttcctgcgggtggcaatgggttgtatcttgtggttgatgaaaacgaacagtttagg
gaggataattttctaaagttgcaggatacatttgctaaacaaaaacagattgttggccgt
aggactgcaaatgggaaatctagcgggagaattgctaaaggtggcagtgcttccggaggt
tcggacatttataaaattgttaagatgattatggaacggaatttccaaccagtcattgtc
ttcagtttcagtagaagagaatgtgaacagcatgcgatgtccatgtccaaacttgacttt
aatacccaagaagaaaaggacacagtggaacatattttcaaaaatgcaattctctgtttg
aatgaagaagacagagaactgcctgcaattgagttaatgttacctcttctccagagaggt
attgctgttcatcattctgggcttcttcctgtaattaaggagttagtggagcttcttttc
caggaaggtcttgttaaggcactttttgccacagaaacttttgccatgggtttgaacatg
ccagcaaaaacagttgtcttcactgcctttaaaaaatgggatggtgatagtcaccgattt
attggatctggtgagtacattcagatgagtggaagggctggacgccgtggaaaagatgag
aggggtatatgtattataatgattgatgagcagatggagatgggaacaattaaagaaatg
attttgggcaaaccagctcctcttgttagtactttcagactgagctactactcaattcta
aatttaatgagccgggccgaagggcagtttacagctgagcatgttattagacactcattt
catcaatttcagcatgaaaaggcattgcctgatattgggaaaagagtgtcaaagttagag
gaggaagccgccacacttgaggcttcaggggaggccgaagttgctgaataccacaagtta
aaacttgacatagcacaacttgagaagaagatgatgtctgaaataacaaggccagaaaga
gttctctattttcttcttcctggtcgattggtaaaggtaagagaaggtggaacagattgg
ggttggggagttgtagtcaatgttgttaaaaagccctcagctgggttaggcatcttgcct
tcacgtggtggtgcttatatagtggataccttactccaatgctctccttgtctaagcgag
aatagttcacgaccaaaaccttgtccaccccgtcctggagaaaagggtgaaatgcacgtg
gtcccagttcagctgcctcttatttcagccttgagcaaactcagaatatctattccttct
gatctcaggcccgtggaagcaagggaaagcatattgcttgcattggaagaactgggaact
cgttttgcacaaggttttccaaaattgaatccagtcaaggacatgaatatagaagatcca
gaaattgttgagttggtgaaacagatcgaggaacttgagcggaaattatacgctcaccct
ctgcataagtcacgtgaagtggaccagatgaaatgttttcagaggaaagcagaagttaat
catgaaattcaaatactcaagaccaaaatgcgtgattcccagcttcaaaaatttcgtgat
gaactgaagaatcgttctagggtcttgaaaaagcttggtcacattgatgcagatggtgtt
gttcaattgaaggggcgtgcagcctgcttgattgacacaggagacgagcttcttgttact
gaattaatgtttaatggcacattcaatgacctagatcaccaccagattgcagcccttgca
agttgttttataccaggagacaagtcaaatgagcagattcaattaagaaccgagcttgct
agaccattacagcaactccaagatagtgcaagaagaattgctgagatacaacatgaatgc
aagttggatataaatgtggaagaatatgtggaatcaacagttaggccgtatttgatggat
gtcatttactgttggtcaaagggagcaagtttctcagaggtgattcaaatgacagatatt
ttcgagggtagcatcattcgaagtgctagacggcttgatgaattcttgaatcagttgcgc
gcagctgccaatgctgtgggggaggtcaacttagaaagcaagttttctgcagccagtgac
agccttcgcagaggtataatgttcgcaaactcactctatttgtag
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