Cucumis melo (muskmelon): 103492760
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Entry
103492760 CDS
T03195
Name
(RefSeq) DNA mismatch repair protein MSH6 isoform X2
KO
K08737
DNA mismatch repair protein MSH6
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
103492760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmo03400
]
103492760
DNA repair and recombination proteins [BR:
cmo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
103492760
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
AAA_29
Motif
Other DBs
NCBI-GeneID:
103492760
NCBI-ProteinID:
XP_008451484
UniProt:
A0A1S3BQZ5
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Position
1:complement(33416203..33425788)
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AA seq
1311 aa
AA seq
DB search
MSSSRRSSNGRSPLVNQQRQITSFFTKKPTGDNSAARTHSISTLTPSPSPNINSPPSVQS
KRKKPLLVIGGGAGPFSSSPSPSPGPSSLPDKEEKSHGDGVIGKKIKVYWPLDKTWYEGR
VKMFDEKAGKHLVQYDDAEEEMLVLGNEKIEWVEESAKKFKRLRRGSSSPVTAAVVEDMD
DINDLSDGDGSDDSRDEDWEKNVENEVSEEEDVDLVEEDEDEDGSEEDAVGKSRRKQGGQ
VESKKRKMSNGKKVEVAPKKIKSSGGSVTSGGLQLSSMETKIKSESASVLKGINEIASDA
LERFNSREAEKFRFLKEDRKDANKRCPGDPDYDPKTLYLPPYFVKNLSDGQRQWWEFKSK
HMDKVLFFKMGKFYELFEMDAHIGAKELDLQYMKGEQPHCGFPERNFSLNVEKLARKGYR
VLVIEQTETPEQLERRRKEKGSKDKVVKREICAVVTKGTLTEGEMLSLNPDASYLMAVTE
KFHGLENQQAERILGVCVVDVATSRVILGQFGDDLECSALCCLLSELRPVEIIKPAKLLS
PETERVLLTHTRNPLVNELVPLLEFWNAEKTVQEVKRLFKGIANRSVSGSSSEASLLNDD
TPGENDGLSFLPVVLSELVTAQENGSWALSALGGILFYLKQAFLDETLLRFAKFELLPCS
GFSDVISKPYMVLDAAALENLEIFENSRNGDSSGTLYSQLNHCVTAFGKRLLKTWLARPL
YDVESIKARQGAVASLRGDNLSFSLEFRKALSKLPDMERLLARIFSNSEANGRNAKNVVL
YEDAAKKQLQEFISALRGCELMLQACSSLHVILPSVESRRLNCLLTPGEGLPDLHSVLSH
FKDAFDWVEANSSGRVIPREGVDVEYDSACEKIKEIQSSLTKHLKEQRKLLGDTSITYVT
VGKETHLLEVPESLQGNIPQTYELRSSKKGFFRYWTPNIKKLLVELSLAESEKESSLKSI
LQRLIGKFCEHHLQWRQLVSAIAELDVLISLAIASDYYEGYTCQPLFSKSQCQSEVPRFT
AKNLGHPILRSDSLGEGTFVPNDITIGGSGANFILLTGPNMGGKSTLLRQVCLSIILAQI
GADVPAESFELAPVDRIFVRMGAKDQIMSGQSTFLTELSETALMLSSATRNSLVILDELG
RGTATSDGQAIAESVLEHFVSKVQCRGVFSTHYHRLALAYYKDPRVSLYHMACRVGEGNN
GLEEVTFLYRLTPGTCPKSYGVNVARLAGLPNCVLTEAAAKSMEFEATYGMAGEESEDNL
CNHAWVDDTITLIQKLISLESTVRCNDETEKNGIGSLKQLQQQARILVQQG
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatctcgtcgatccagtaatggccgatcgccattagttaaccaacaacgtcaa
atcacttccttctttaccaaaaaaccgactggagacaactccgccgctagaactcattcc
atttccactctgactccaagccctagccctaacattaattcccctccgtcagtacagtcc
aagcgcaagaaacccctgttggttatcggcggcggtgctggacctttttcttcttctcct
tctccttctcccggtccttcttctttacctgataaggaggagaagtcgcacggcgatggg
gttattgggaagaagataaaggtttattggccgttggataagacctggtacgagggtcgt
gtgaaaatgtttgatgagaaggctggaaagcatttggtgcagtatgacgatgcggaggag
gagatgttggtgttggggaatgaaaagattgagtgggttgaggaaagtgcgaagaagttt
aagcgtttgcgacggggttcttcatcgccggtgactgctgcagtggtggaagatatggat
gatattaatgatttaagtgatggggatggcagcgatgactctagagatgaagattgggag
aagaatgtggagaacgaggtgagtgaagaggaggatgtggatctggtggaggaagatgaa
gatgaagatgggagcgaggaggatgcagtgggaaagtcaagaaggaagcagggtgggcag
gtggagtctaaaaagcgtaagatgagcaatggaaagaaagttgaagttgctccaaagaag
atcaaaagtagcggtggaagcgtgacttctggagggttacaactttcttcaatggagact
aagattaaatcagagagtgcaagcgtattaaagggaataaatgaaattgctagtgatgcc
ttagaaaggttcaactcacgagaagctgaaaagttcagatttctgaaagaagataggaag
gatgcgaacaaaagatgtccaggagatcccgattatgatccaaaaacattgtatttgcct
ccatattttgtgaagaatttatcagatggccagagacaatggtgggagtttaagtcaaaa
cacatggacaaagttctgtttttcaagatgggtaaattttatgaactttttgaaatggat
gcacacataggagctaaagaacttgatttgcaatatatgaagggagaacaacctcattgc
ggcttccccgagagaaacttttcactcaatgtggagaagttggcaaggaagggttatcga
gttcttgtcatagagcagacagaaactcctgaacaattagagagacggcgtaaggagaaa
ggttccaaggacaaggtagtgaaacgtgaaatatgtgctgtagtcacaaaaggaacacta
actgagggcgagatgctatcgttgaatcctgatgcttcatatctgatggcagtaactgaa
aaatttcatgggttggaaaatcaacaagcagaaaggattttaggagtttgtgtggttgat
gtggccaccagtagggttatccttgggcagtttggagatgacttggagtgcagtgccttg
tgctgtcttttgtccgagcttagaccagttgaaattattaaacctgctaaactgctaagt
cctgaaactgagagggtgctgctcactcatacgagaaatcctttagtgaatgagttagtt
ccattattggaattctggaatgctgagaaaactgttcaagaagttaagagattgtttaag
ggcattgctaatcgatcggtctctggatcttcaagtgaagcaagtttactcaatgacgat
actcctggagaaaacgatgggttgagcttcttgccagttgttttatccgaactggttact
gcacaagaaaatgggtcttgggcactttcagctcttggaggaattctattctatctgaag
caagcttttctggatgagacattgcttagatttgcaaagtttgaattacttccttgttct
ggcttcagtgatgttatttcaaaaccctacatggttcttgatgcagctgccttagaaaat
ctggagatctttgagaacagcagaaacggggactcttctgggacgctctattcacagttg
aaccactgtgtaactgcatttgggaaaagattacttaagacatggcttgcaaggccttta
tatgacgttgaatcaattaaagccaggcaaggtgctgtggcgagcctacggggagataac
ttatctttttctcttgagtttcgaaaagcattatccaaacttccagatatggagcgtcta
cttgctcgcattttttctaatagtgaggcaaatgggaggaatgcaaaaaatgtggttcta
tatgaggatgcagccaaaaaacaactacaagagttcatatctgctttgcggggttgtgag
ctcatgctccaagcttgttcatcactccatgtcattttgccaagtgttgaatcgagaaga
ctcaattgcctattaacaccaggtgaaggtcttccagatcttcattcagttctaagtcat
ttcaaggatgcttttgattgggttgaagccaatagttcaggacgtgtaatacctcgcgaa
ggtgtagacgtggagtatgactctgcctgtgagaaaattaaggagatacaatctagcttg
acaaagcatttaaaggaacagcggaaattacttggggacacatcaatcacttatgtgaca
gttggaaaagagacacatttgttggaagtgcctgaaagtttgcagggtaacattcctcag
acttatgagttgcgatcatctaaaaagggcttcttccggtactggactcctaatattaag
aagttgttagtggagctttctctagctgaatctgagaaggagtcctcactgaaaagcatt
ttgcaaaggttaattggaaaattctgtgaacatcatctccaatggagacaattagtctct
gcaattgctgaacttgatgttttgattagcttagcaattgcaagtgattattatgagggt
tacacatgccaaccacttttctcaaagtcacagtgtcagagtgaagtgccacgttttact
gctaaaaacttgggacatcccattctaagaagtgattcactgggtgagggtacatttgtc
cccaatgacattactattggtggctcaggagccaacttcattcttctgactggccctaac
atgggtggaaagtctactcttcttcggcaagtttgcttgtctattattctggctcagata
ggtgcagatgttccagcagaaagttttgagttagctcctgttgatcgaatttttgtccgg
atgggtgctaaggatcagattatgtctggccaaagtacatttttgacggaactatcagaa
actgcactgatgctgtcatcagctacccgtaattcattggtgatcttggatgaacttgga
cgtggtacagcaacttcagatggacaggcaattgcggaatcagttcttgaacattttgtt
agcaaggtgcagtgccggggggtattctcaactcattatcaccgattggccttggcttat
tataaagatcctagggtttcattataccatatggcatgtcgagttggagagggaaacaac
ggtttagaagaagttacatttctctatcgtctaactcctggtacatgccctaaaagttat
ggcgtgaatgttgcacggttagctggactcccgaattgtgtcttgaccgaggctgcggct
aaatcaatggaatttgaggctacatatggcatggctggagaagaatctgaagataacttg
tgcaatcatgcttgggttgatgatacaatcactttgattcaaaagttgataagcctggaa
tcaaccgtgagatgcaatgatgaaactgagaagaatggtatcggttccttgaaacagctt
caacaacaagcaagaatacttgtgcagcaaggttga
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