Cucumis melo (muskmelon): 103493002
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Entry
103493002 CDS
T03195
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103493002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103493002
03012 Translation factors [BR:
cmo03012
]
103493002
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103493002
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103493002
Translation factors [BR:
cmo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103493002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
Helicase_C
OB_NTP_bind
HA2_C
DEAD
HA2_N
nSTAND3
Ank_5
ATPase
AAA_23
AAA_22
TFIIA
Ank_2
AAA_19
Rad17
AAA_7
PhoH
FtsK_SpoIIIE
AAA_25
ABC_tran
SRP54
Med3
Motif
Other DBs
NCBI-GeneID:
103493002
NCBI-ProteinID:
XP_008451833
UniProt:
A0A1S3BTJ2
LinkDB
All DBs
Position
7:complement(23120869..23141564)
Genome browser
AA seq
1319 aa
AA seq
DB search
MAKKKQKKGEQKPKSKPIPNVLGSAITQTLQRFCLTNDEVFTFEADLSKRERAFVHDVCR
KMGMKSKSSGHGDQRRVSVYKSKLQMETMKFSEKTKTVLDDLFSMYPPDDGELGKETVGN
HNIKADKQRRKKDDIFWRPSTTKEELMKKLGSYTMKSVANMKKISEERSKLPIASFQDVI
TSTVESHQVVLICGETGCGKTTQVPQFLLDYMWGKGETCKIVCTQPRRISAVSVSERISY
ERGENVGSDIGYKIRLESKGGRHSSIVLCTNGILLRVLISEGLGKLTMEASRKSWKNVAS
DLTHIIVDEVHERDRYSDFILTILRDLLPSYPHLRLILMSATIDAERFSKYFGGCPIINV
PGFTYPVKSFYLEDILSILKSSEENHLDDTVGVSDGEPELTEEDILALDESIEMAWLNDE
FDPLLELVASGGSSQIFNYQHSVTGLTPLMVLAGKGRVSDVCMLLSFGAMCELQAKDGTT
ALELAERGDQKETAEAIRKHLETSTSNSKEERQLIGAYLAKNSNSVDVRLLEQLLGKICL
DSKEGAILVFLPGWDDISKTRERLSINPLFKDASKFLIISLHSMVPSKEQKKVFRRPPPG
CRKIILSTNIAETAITIDDVVYVIDSGWMKEKSYDPYSNVSTFQSSWISKASAKQREGRA
GRCQPGICYHLYSKFRASSLPDFQVPEIKRMPIEELCLQVKLLDPNCKIEVFLQKTLDPP
VFDTIRNAILVLQDIGALSLDEKLTELGKKLGSLPVHPVTSKMLIFAILMNCLDPALTLA
CALDYKDPFTLPMLPSERKKAAAAKAELASLYGGHSDQLAVVAAFNCWKNAKGRGQARFC
SKYYISSSTMTMLSGMRRQLEMELVQNGFIPEDVSTCNLNACDPGILHAVLVAGLYPKVG
RLLPPQKRGKRAVIETCSGSRVLLHRHSLNFELSLKQTDSHPLIVYDEVTRGDGGTHIRN
CTVVGPLPLLMVAKDIAVAPARMSDNCKGGTENNNNGNDEAGIDETAQEKMDIENKSNQQ
PEEMIMSSPDNAVTVVVDRWLQFWSKALDIAQLYCLRERLSSAILFKVKHPNGVLPPVLG
ASMHSLACILSYDGLSGISLESVEMLTSMVNATEIGQFAPGRSVGTHKKVSWFHKLHPNY
NNFSVPEANGTSILNDPLSQNLLPTPDFRTANPSDPSSPYVRASPNSAYARSTPQSQREH
KPFKLGKPSRDQDAAQQQQQEQQQQEQQQQQQHAQEHNTRKQRNSHKERMAAKQQKPPSG
DLSLNGYGLNTYGPYGHRGISLKRPRSVMTGDGLVVQASGEGKFAAFIDETSIIQIHLL
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaagaagcagaagaagggggagcaaaagcctaaatccaaaccaattccaaac
gttttgggttctgcaattacacaaacactccaacggttttgcctgaccaatgacgaagtt
ttcacatttgaagctgatctttcgaagcgtgaacgtgctttcgtgcatgatgtgtgcagg
aaaatgggtatgaaatcaaagagttctgggcatggagaccaacgacgtgtgtctgtatat
aaatccaaactgcaaatggagacgatgaaattttctgaaaaaaccaaaactgttttggac
gacttgtttagtatgtatcctcccgatgatggagagttgggtaaggagacagttgggaac
cacaatataaaggctgataagcaaaggcgtaagaaagatgacattttctggaggccgtca
acgaccaaggaagagctaatgaagaaattgggatcatatacgatgaagagtgttgctaat
atgaaaaagatctcagaagagagatctaagcttccaattgcatcatttcaagatgtcatt
acttcaactgttgaatctcaccaggtcgttctcatatgtggtgagactgggtgtggaaag
acaacgcaggtccctcagtttcttttggattatatgtggggtaagggagagacgtgtaag
atagtttgtacccaacctcgacgaatatctgctgtatcagtttctgagcgaatctcctat
gaaagaggagaaaatgttggaagtgatattggatacaagatacgactggaaagtaaaggt
ggtagacactcatcaattgtactctgtacgaatggtattctcttaagggtgctgatttca
gaggggttgggtaaattaacaatggaagcctccagaaagagttggaaaaatgttgcttcg
gacttaactcacattattgtggatgaagttcatgaaagggaccgttactcggacttcatt
ctaacaattttgagagacttgcttccatcatatcctcatttaaggctgatactcatgagt
gctacaattgatgctgaacggttttcaaaatattttggaggctgtccaatcatcaacgtt
cctggattcacctatcctgtaaaaagtttctatctggaggatatactttctatattgaaa
tcttcggaagagaaccaccttgatgatacagtgggtgtttcggatggggaacctgagcta
accgaagaagacattcttgctttggatgaatcaattgaaatggcttggttgaatgacgaa
ttcgatccccttttagaattggttgcttctggtggatcctctcaaattttcaattatcag
cattctgtgactgggttaacacctctaatggttcttgctggaaagggtagagtttccgat
gtttgcatgctgctctcttttggtgctatgtgtgaattacaggccaaggatggcacaact
gcactggaattggccgaacgaggagatcagaaagaaactgctgaagcaatcagaaaacat
ttggagacttccacgtccaactccaaggaagaacgtcagttgattggtgcatatcttgca
aaaaattctaattctgttgatgttcgtcttctagagcagttgttaggaaaaatatgtctt
gattcaaaagaaggagctattcttgttttccttcctgggtgggatgacattagcaagact
cgagaaagattatcaatcaatcctcttttcaaagatgcatcaaaatttctgataatctct
cttcattcaatggttccttctaaagagcaaaagaaggtattcagacgacctcctcctggt
tgtcgcaaaattattctgtccactaatattgctgaaacggccattacaattgatgatgtg
gtttatgttatagacagtggatggatgaaagaaaaaagttatgatccttacagtaatgtt
tctacttttcaatcatcttggatatcgaaggctagtgccaagcagcgtgagggtcgtgca
ggtcgctgtcagcctgggatatgctatcacctttattcaaagtttcgtgcatcgtctctt
cctgattttcaagttcctgaaattaagagaatgccaatagaggaactctgtttgcaggtg
aaattgcttgatcccaattgtaagatagaggttttcttgcagaagactttggatcctcca
gtttttgatactatccgtaatgcaatcttagtccttcaggatattggggctctgtcacta
gatgagaaactgactgagctggggaagaaattaggttcattgcctgtccatccagtcaca
agcaagatgcttatcttcgccatactgatgaactgccttgatcctgctctaactctggct
tgtgctttggactacaaggaccctttcactcttccgatgttaccaagcgaacgaaagaaa
gctgctgctgctaaagccgagcttgcttctttgtatggtgggcatagtgatcaactggct
gttgttgctgcatttaattgctggaaaaatgctaaaggaaggggtcaagcgcgtttctgt
tctaaatactacatctcttcgagcactatgactatgttatctggcatgcggagacaactt
gagatggaactagttcaaaatggttttatacctgaggatgtttcaacttgcaacttgaat
gcttgtgaccctggcatactccacgctgtccttgtggctggtttatatccaaaggtggga
agattacttccaccccagaaaaggggaaagcgggctgtcattgaaacttgttcagggagc
agagttcttttgcaccgacattcccttaactttgaactgtcactcaagcaaacagatagt
catcctctaattgtttatgatgaggtaacccgtggggacggtggtacacacattagaaac
tgcactgttgttgggcctctcccattattaatggttgcaaaggacattgctgttgcccct
gcaaggatgagcgataattgtaaaggtggtaccgaaaataacaataatggcaatgatgaa
gctggtatagatgaaactgctcaagagaagatggatatagaaaataaatcaaatcaacag
ccagaagagatgattatgtcctcccctgataacgcagtaactgtggttgttgaccgttgg
ctgcagttttggtcaaaggcacttgatattgctcagttatactgcttgagagagcgatta
tcttcagcaatcttattcaaagtaaagcatccaaatggagttcttcctcctgttcttggg
gcctctatgcattccttggcttgcattctatcttatgatggcttatctggtatttcatta
gaatcagtagaaatgttgacgtcgatggtaaatgcgactgaaattggccaatttgcacct
gggaggtccgtaggaacacataagaaagtaagttggtttcataaattgcatccaaattat
aacaattttagtgttcccgaagctaatggaacatcaattttgaatgatccgttaagtcag
aatcttttaccaacacctgattttagaacagcaaacccaagtgacccatcaagcccttat
gttagggcttcacccaattcagcctatgcaaggtcgacaccacagtcacagagagagcat
aagcctttcaagctgggaaaaccctctcgagaccaagatgctgcccagcagcagcagcag
gagcagcagcagcaggagcagcagcagcagcagcagcacgcacaagagcacaacacacgt
aaacaaagaaactcccacaaggagcgcatggcagctaaacaacagaagcctccatcggga
gacctcagtttaaatgggtatggattaaatacatatggaccatatggccatcggggtatc
tctctaaagcggccgcgctcagttatgactggagatggtctagtggttcaggcctcgggg
gaagggaagtttgctgcttttatagatgaaacaagcatcatacaaatccatctgctatag
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integrated database retrieval system
